Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0825
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.7  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -3

Query: 325 VFSFMTALPLVASVTLIELSWATQQLYFRPQRRKRCGPNRHL 200
           V  F+T          + +SW  ++L  R  RRK  G   HL
Sbjct: 235 VSGFITTEVAGTYAIFLYISWHQKELVRRDSRRKNYGGVYHL 276


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/44 (20%), Positives = 21/44 (47%)
 Frame = +3

Query: 465 NESGGLSAMKKFQSLIVMLVSRPAIHSWTRYTRTLSRASIFSKG 596
           N  G ++ ++K +  +  L+ +  + SW  YT+ +    +   G
Sbjct: 127 NTDGDIAGLRKKKHKVNPLLMQSGMGSWEVYTKGIGAKLLLQMG 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,411
Number of Sequences: 438
Number of extensions: 4636
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)