Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0825
(705 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 58 6e-09
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 57 1e-08
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 57 1e-08
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 31 0.56
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 31 0.56
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 31 0.74
At4g04545.1 68417.m00665 Ulp1 protease family protein contains P... 30 1.3
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 29 2.3
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 29 2.3
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 29 2.3
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 29 2.3
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 29 4.0
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 29 4.0
At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-... 29 4.0
At3g46790.1 68416.m05079 pentatricopeptide (PPR) repeat-containi... 28 6.9
At5g27600.1 68418.m03305 AMP-binding protein, putative similar t... 27 9.2
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 27 9.2
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 58.0 bits (134), Expect = 6e-09
Identities = 34/85 (40%), Positives = 47/85 (55%)
Frame = +1
Query: 1 RHEPIRSTVTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKLPLGQLLA 180
RHE S+VTS+ WHPNN+LL S D K RVFS +IK ++ + + G+ L Q +
Sbjct: 143 RHE---SSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDTKYAHYLNGAFFLLKQQIL 199
Query: 181 EFPNSPSGGGWVHSVSFSADGNKVA 255
+ S S W V +S GN +A
Sbjct: 200 QLDLSYS---WAFGVKWSPSGNTLA 221
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 554 IHQNAI-SCIHIFKGT*SRTNKFSTSGLDGQLSYWDL 661
+H N I S + + K + +FSTSGLDG+++ WDL
Sbjct: 331 VHDNCINSIVSLSKAGSPKVMRFSTSGLDGKVAIWDL 367
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 57.2 bits (132), Expect = 1e-08
Identities = 32/85 (37%), Positives = 46/85 (54%)
Frame = +1
Query: 1 RHEPIRSTVTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKLPLGQLLA 180
RHE S+VTS+ WHPNN+LL S D K RVFS +IK ++ + ++ G+ +
Sbjct: 143 RHE---SSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDTKDSKAGSPAETKFGEQIL 199
Query: 181 EFPNSPSGGGWVHSVSFSADGNKVA 255
+ S S W V +S GN +A
Sbjct: 200 QLDLSYS---WAFGVKWSPSGNTLA 221
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +2
Query: 554 IHQNAI-SCIHIFKGT*SRTNKFSTSGLDGQLSYWDL 661
+H N+I S + + KG + +FSTSGLDG+++ WDL
Sbjct: 331 VHDNSITSIVPLGKGGSPKVMRFSTSGLDGKIAIWDL 367
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 57.2 bits (132), Expect = 1e-08
Identities = 32/85 (37%), Positives = 46/85 (54%)
Frame = +1
Query: 1 RHEPIRSTVTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKLPLGQLLA 180
RHE S+VTS+ WHPNN+LL S D K RVFS +IK ++ + ++ G+ +
Sbjct: 143 RHE---SSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDTKDSKAGSPAETKFGEQIL 199
Query: 181 EFPNSPSGGGWVHSVSFSADGNKVA 255
+ S S W V +S GN +A
Sbjct: 200 QLDLSYS---WAFGVKWSPSGNTLA 221
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 554 IHQNAI-SCIHIFKGT*SRTNKFSTSGLDGQLSYWDL 661
+H N I S + + K + +FSTSGLDG+++ WDL
Sbjct: 331 VHDNCINSIVSLSKAGSPKVMRFSTSGLDGKVAIWDL 367
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 31.5 bits (68), Expect = 0.56
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWG 150
+ S+D+HP+ LL GSAD V+ + ++ GP G
Sbjct: 188 IQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAG 229
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 31.5 bits (68), Expect = 0.56
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWG 150
+ S+D+HP+ LL GSAD V+ + ++ GP G
Sbjct: 188 IQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAG 229
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSADFKVRVF 99
V S+DWHP LLV+G D V+++
Sbjct: 271 VKSVDWHPTKSLLVSGGKDQLVKLW 295
>At4g04545.1 68417.m00665 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 882
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 366 NSLIVAGHSCIPLLYCHDGDDIKYVAKLDNTQRNESGGLSAMKKFQSL 509
+SL + G +C+ LL H + + Y AKLD + + A+K F +L
Sbjct: 828 SSLGLVGIACVILLELHSVNAMDYCAKLDEEKMRGAAKQYAIKMFNAL 875
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 267 DSSINVTDATKGRAVIKLKTEYLPFLGCSW 356
D S++V +KG V LK + P L CSW
Sbjct: 466 DGSVHVWSLSKGNIVSILKEQTSPILCCSW 495
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +1
Query: 1 RHEPIR---STVTSIDWHPNNILLVAGSADFKVRVF 99
R +P+R ++ +DWHPN + GS+D VR++
Sbjct: 491 RIQPLRIMAGHLSDVDWHPNCNYIATGSSDKTVRLW 526
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSADFKVRVF----SAYIKDIEDQPGPNVWGSKL-PLGQLLA 180
V ++ HP+ I+ + S D VRVF +A I +E P VWG + P G +LA
Sbjct: 63 VAALAAHPSGIIAASSSIDSFVRVFDVDTNATIAVLEAPPS-EVWGMQFEPKGTILA 118
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 34 IDWHPN-NILLVAGSADFKVRVF 99
+DW+P+ N L++ GSAD VRVF
Sbjct: 332 VDWNPHDNNLILTGSADNTVRVF 354
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSADFKVR 93
+ S+D+HP+ LL GSAD V+
Sbjct: 281 IQSLDFHPHEFLLATGSADKTVK 303
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 16 RSTVTSIDWHPNNILLVAGSADFKVRVF 99
R +V + +HP+ LL GSAD ++R++
Sbjct: 17 RHSVMDVSFHPSKSLLFTGSADGELRIW 44
>At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-10)
/ HD-ZIP transcription factor 10 / homeobox protein
(GLABRA2) identical to homeobox protein (GLABRA2)
(homeobox-leucine zipper protein ATHB-10) (HD-ZIP
protein ATHB-10) GB:P46607 [Arabidopsis thaliana]
Length = 747
Score = 28.7 bits (61), Expect = 4.0
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +3
Query: 240 RK*SCWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSWITNNSLIVAGHSCIPLLYCHD 419
R+ S WV DSS N ++ A + + T L G +N ++ +G S IP D
Sbjct: 626 REKSIWVLQDSSTNSYESVVVYAPVDINTTQLVLAGHD-PSNIQILPSGFSIIP-----D 679
Query: 420 GDDIK-YVAKLDNTQRNESGGLSAMKKFQSLI 512
G + + V RN GG Q+LI
Sbjct: 680 GVESRPLVITSTQDDRNSQGGSLLTLALQTLI 711
>At3g46790.1 68416.m05079 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 657
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 109 IKDIEDQPGPNVWGSKL 159
++D+ +PGP VWGS L
Sbjct: 445 VQDMRTEPGPKVWGSLL 461
>At5g27600.1 68418.m03305 AMP-binding protein, putative similar to
AMP-binding protein (MF39P) gi:1617274 from Brassica
napus, long-chain-fatty-acid--CoA ligase - Brassica
napus, EMBL:Z72152; contains Pfam AMP-binding enzyme
domain PF00501
Length = 700
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +1
Query: 52 NILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKLPLGQLLAEFPNSPSGG----GWVH 219
N + S FK +S + + D NV+ SK +L++ FP+ P G +VH
Sbjct: 33 NATASSASPFFKEDSYSVVLPEKLDTGKWNVYRSKRSPTKLVSRFPDHPEIGTLHDNFVH 92
Query: 220 SVSFSADGNKVAGSPTTAQST 282
+V A+ NK G+ + T
Sbjct: 93 AVETYAE-NKYLGTRVRSDGT 112
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 25 VTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWG 150
+ S+D+HP LL GSAD V+ + ++ P G
Sbjct: 187 IRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEATG 228
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,884,777
Number of Sequences: 28952
Number of extensions: 332231
Number of successful extensions: 1049
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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