Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0824
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8TK11 Cluster: Putative uncharacterized protein; n=2; ...    35   1.7  
UniRef50_Q5CPE0 Cluster: Putative uncharacterized protein; n=1; ...    34   3.8  
UniRef50_Q235P7 Cluster: Putative uncharacterized protein; n=1; ...    34   3.8  
UniRef50_Q2FAS4 Cluster: RhUL27; n=2; Cercopithecine herpesvirus...    33   6.7  
UniRef50_Q1ZVI8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  

>UniRef50_Q8TK11 Cluster: Putative uncharacterized protein; n=2;
           Methanosarcina|Rep: Putative uncharacterized protein -
           Methanosarcina acetivorans
          Length = 379

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 416 KFG-KNIITKKKPHLFEERERESENTLYWQTNQFTLKKKIACVQFTRVRSETFKKLKYNY 592
           K+G K I+T   P+ +   +RE  N    +T    LKK      F  + SE      Y +
Sbjct: 167 KYGVKCIVTGGNPYEYTSFKRELLNVSTDETYMKLLKKSFGLKGFGGIASEMLNNPMYCH 226

Query: 593 PKCLSILLVKFVH 631
           P C+S ++  F++
Sbjct: 227 PMCISTMITGFLY 239


>UniRef50_Q5CPE0 Cluster: Putative uncharacterized protein; n=1;
           Cryptosporidium parvum Iowa II|Rep: Putative
           uncharacterized protein - Cryptosporidium parvum Iowa II
          Length = 272

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +2

Query: 413 LKFGKNIITKKKPHLFE-ERERESENTLYWQTNQFTLK--KKIACVQFTRVRSETFKKLK 583
           +K  +N   KK    F+ E E  S N +Y+Q   +  K  KKIA    T +     +K+ 
Sbjct: 145 IKLLRNERNKKLRECFKLELELISLNYIYFQEGDYVWKNGKKIADYDMTEIERSFIRKII 204

Query: 584 YNYPKCLSILLVKF 625
             Y K LSI L+ +
Sbjct: 205 TEYEKLLSIRLISY 218


>UniRef50_Q235P7 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1292

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = -2

Query: 365  NNLSTLELCIS*TK*VLAHKVFHSLKFALN-----NIIIHTHRNYEKNALKISTNIIIHS 201
            NNL  L+L ++       HK+F SLKF LN     NI I  H  + KNA       ++H 
Sbjct: 898  NNLKNLDLVLNFCSLYSEHKLFDSLKF-LNQLQYLNICIDKHSKFGKNAAISLGKSLMHL 956

Query: 200  EYLKRLL 180
            + +++L+
Sbjct: 957  KMVQKLI 963


>UniRef50_Q2FAS4 Cluster: RhUL27; n=2; Cercopithecine herpesvirus
           8|Rep: RhUL27 - Cercopithecine herpesvirus 8 (Rhesus
           cytomegalovirus)
          Length = 579

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -3

Query: 103 RHTHTLKSVHLSINNF--EFCDFL 38
           RH H LK +H +++NF   FCDFL
Sbjct: 432 RHIHDLKHIHFTVSNFLETFCDFL 455


>UniRef50_Q1ZVI8 Cluster: Putative uncharacterized protein; n=1;
           Vibrio angustum S14|Rep: Putative uncharacterized
           protein - Vibrio angustum S14
          Length = 205

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = +1

Query: 265 MMILLSANLRL*KTLCASTYFVQEIHNSRVDRLFVLSDIFATLQENHLKFKIWKKYHYQK 444
           M  L   N++L   L +   + +EIH +  ++   L++ F  L ++++++K W + H  K
Sbjct: 94  MEALQDDNIKLWVGLYSDPNYFREIHTNATEQKVYLTEYFNKLHKSYVQWKTWLRIHSNK 153


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 669,666,945
Number of Sequences: 1657284
Number of extensions: 13299709
Number of successful extensions: 29724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29714
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)