Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0824
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2568| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.51 
SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                29   3.6  
SB_12775| Best HMM Match : DUF1237 (HMM E-Value=6.1)                   29   4.8  
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)                    28   6.3  

>SB_2568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 410 SLKFGKNIITKKKPHLFEERERESENTLYWQTNQFTLKKKIA 535
           S  FG  I TK   H+F  R R+S  T+  Q   F LK ++A
Sbjct: 91  SFWFGSGIRTKTCDHMFRSRNRKSAVTIGLQIAPFDLKWRVA 132


>SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -2

Query: 278 NNIIIHTHRNYEKNALKISTNIIIHSEYLKRLLAPTNLEYTL*KINNLSNI*PGIGDF*A 99
           NNIII+ + +  KN +K       H  Y   +   + ++ T   INN +NI     D   
Sbjct: 37  NNIIINNNNDNSKNNIKKHKAYQKHGHYQNNININSEIKDTKDSINNNNNIINNDNDNNN 96

Query: 98  HAHT 87
           H H+
Sbjct: 97  HKHS 100


>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 300

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 198 FRVYYYVCTDFQCIFFVVTVCVYDDIVECKF---KTVKNFVCKY 320
           F V + +C    C + V+++C Y D++ C++     V   +C+Y
Sbjct: 181 FCVDFLICCYVVCRYAVMSICCYVDMLLCRYAVMSCVDMLLCRY 224


>SB_12775| Best HMM Match : DUF1237 (HMM E-Value=6.1)
          Length = 328

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 696 IQFHRRALPPYYTKVILPIIY*WTN--FTNNILRHLG*LYFNFLKVSLLTRVN 544
           I  H+R   PYY  ++LPII  +T    + +    L  L  +FLK    +R++
Sbjct: 154 IYVHKRTYEPYYALLLLPIICTYTKDVCSEHDSMELAELLSHFLKTCFPSRID 206


>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
          Length = 734

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -2

Query: 317 LAHKVFHSLKFALNNIIIHTHRNYEKNALKISTNIIIHSEYLKRLLAPTNLEY 159
           L H   HSL  +  + +IHTH +   +AL   T  IIH        AP  + Y
Sbjct: 395 LIHTHSHSLALSFTSTLIHTHSH--SHALSF-TRTIIHMHSPDPWYAPATVHY 444


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,831,934
Number of Sequences: 59808
Number of extensions: 424749
Number of successful extensions: 803
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)