Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0824
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031635-1|CAA21039.2|  487|Caenorhabditis elegans Hypothetical ...    32   0.45 
AC006750-2|AAO38570.1|  478|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC006750-1|AAF60535.1|  527|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z93382-6|CAB07617.1|  136|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical ...    29   4.2  
AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF043701-5|ABP57822.1|  166|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF039719-3|AAB96756.1|  730|Caenorhabditis elegans Blistered cut...    28   7.3  
AF022973-11|AAK84524.3|  560|Caenorhabditis elegans Hypothetical...    28   7.3  
AF016444-6|AAB65933.1|  330|Caenorhabditis elegans Serpentine re...    28   7.3  
Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AC006630-4|AAK68324.1|  311|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AL031635-1|CAA21039.2|  487|Caenorhabditis elegans Hypothetical
           protein Y47D3B.1 protein.
          Length = 487

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 134 INCLFFIKYILNWSELTIFLDIQSVLLCL 220
           +NCLFF+K    WS++ +F DI   LL L
Sbjct: 217 VNCLFFVK---PWSDIVVFSDIDDFLLPL 242


>AC006750-2|AAO38570.1|  478|Caenorhabditis elegans Hypothetical
           protein Y39F10B.1b protein.
          Length = 478

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +2

Query: 464 ERERESENTLYWQTNQFTLKKKIACVQFTRVRSETFKKLKYNYPK 598
           E E E+   L+ QTN   LKKK       + R E   KL++NY K
Sbjct: 90  ELELENAKMLHGQTNWLRLKKK---TNDEKYRGEVQIKLEFNYEK 131


>AC006750-1|AAF60535.1|  527|Caenorhabditis elegans Hypothetical
           protein Y39F10B.1a protein.
          Length = 527

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +2

Query: 464 ERERESENTLYWQTNQFTLKKKIACVQFTRVRSETFKKLKYNYPK 598
           E E E+   L+ QTN   LKKK       + R E   KL++NY K
Sbjct: 139 ELELENAKMLHGQTNWLRLKKK---TNDEKYRGEVQIKLEFNYEK 180


>Z93382-6|CAB07617.1|  136|Caenorhabditis elegans Hypothetical
           protein F45G2.8 protein.
          Length = 136

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 434 ITKKKPHLFEERERESENTLYWQTNQFTLKKKIACVQFTRVRSETFKKLKYN 589
           + K   HLF   ++    TLY Q+  F  K++I   +F R+  +  KK + N
Sbjct: 82  VEKHYEHLFNINDKSKGGTLYLQSKVFRAKERID-EEFGRIELKEEKKKEEN 132


>Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical
           protein K03D3.1 protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 155 KYILNWSELTIFL-DIQSVLLCLY*F 229
           KYI  W  LT+F+  +QSV LC+Y F
Sbjct: 231 KYIY-WQTLTVFICKLQSVFLCIYLF 255


>AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical
           protein C16C4.7 protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 86  KCVRVPKNRLFPVKYLINCLFFIKYILNWSE-LTIFLDIQSVLLCLY 223
           K  + P +RL+P  ++ NCLF +K  L  S+ L +F+    + LC Y
Sbjct: 248 KFPKYPISRLYPQFFIKNCLFSVKISLCRSQHLVLFV----LFLCFY 290


>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 600 HLG*LYFNFLKVSLLTRVNCTHAIFFFNVN 511
           H G  YF +  V+L+  VN T +IFF+ VN
Sbjct: 99  HFGNAYFQYFMVTLMA-VNRTTSIFFYFVN 127



 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 600 HLG*LYFNFLKVSLLTRVNCTHAIFFFNVN 511
           H G  YF +  V+L++ +N T +IFF+ VN
Sbjct: 327 HFGNAYFQYFMVTLMS-LNRTTSIFFYFVN 355


>AF043701-5|ABP57822.1|  166|Caenorhabditis elegans Hypothetical
           protein K12C11.7 protein.
          Length = 166

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 311 VQVPILFKKYIIRGLTGYLF*ATFLQLYKRTI*SLKFGKNIITK 442
           +Q PILF+++     TGY+F    L      +  LKFG+  +T+
Sbjct: 14  IQEPILFRQWKPTDTTGYVFSCISLFFIAFCLELLKFGRQRMTR 57


>AF039719-3|AAB96756.1|  730|Caenorhabditis elegans Blistered
           cuticle protein 4, isoformb protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 207 YYYVCTDFQCIFFVVTVCVYDDI 275
           + Y  T FQ IF ++ VC++D I
Sbjct: 702 FLYSFTKFQPIFLIILVCIFDAI 724


>AF022973-11|AAK84524.3|  560|Caenorhabditis elegans Hypothetical
           protein F25G6.1 protein.
          Length = 560

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 410 SLKFGKNIITKKKPHLFEERERESENT 490
           S K+GK + TK KP++F   E E   T
Sbjct: 385 SHKYGKPVATKSKPYVFGTMENEKWKT 411


>AF016444-6|AAB65933.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 7 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 385 QKCRSKQITCQPSNYVFLEQN 323
           ++ R+KQITC  SN   LEQN
Sbjct: 214 ERLRAKQITCSLSNRYSLEQN 234


>Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical
           protein Y41E3.18 protein.
          Length = 510

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 455 LFEERERESENTLYWQTNQFTLKKKIACVQFTRVRSETFKKLK 583
           LFEE+ R+S  +    T Q ++ K +  +  T+  SET +KLK
Sbjct: 19  LFEEKSRKSNRS---PTRQKSINKSLLSLDKTQEFSETSQKLK 58


>AC006630-4|AAK68324.1|  311|Caenorhabditis elegans Hypothetical
           protein F14H12.2 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 419 FGKNIITKKKPHLFEERERESENTLYWQTNQFTLKKKIACVQFTRVRSETF 571
           F  NIIT K PH   E+  E +    W+ + F + K +  V+    R E +
Sbjct: 169 FHGNIITNKYPHCGNEKMIEGK-LFQWKESIFVVTKNVFKVKRLNKRFEVY 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,401,523
Number of Sequences: 27780
Number of extensions: 360338
Number of successful extensions: 857
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)