Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0824
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01220.2 68415.m00035 expressed protein                             29   2.2  
At2g25270.1 68415.m03023 expressed protein                             29   2.9  
At1g32600.1 68414.m04023 F-box family protein-related contains T...    29   2.9  
At2g01220.1 68415.m00034 expressed protein                             28   5.1  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    28   6.8  
At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2 [...    28   6.8  

>At2g01220.2 68415.m00035 expressed protein 
          Length = 388

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 307 LCASTY-FVQEIHNSRVDRLFVLSDIFATLQENHLK 411
           LC   Y F  E H S  DR  +L   F  L E HLK
Sbjct: 196 LCCKIYPFSGEAHGSDEDRKIILPGSFNPLHEGHLK 231


>At2g25270.1 68415.m03023 expressed protein
          Length = 545

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +1

Query: 184 NLFRYSECIIMFVLIFNAFFS*LRCVCMMILLSANLRL*KTLCASTYFVQEIHNSRVDRL 363
           N   YS+   +  LIF   F+ +  +  ++L S  +R  K+   +  +V    +S + +L
Sbjct: 139 NSVGYSKVAYVVSLIFLLIFTVIAIIGCVLLYSGQIRYNKSTTETLEYVMSQADSTISQL 198

Query: 364 FVLSDIFATLQE 399
             +SD  A+ ++
Sbjct: 199 RAISDYLASAKQ 210


>At1g32600.1 68414.m04023 F-box family protein-related contains
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           identical to hypothetical protein GB:AAF25964 GI:6714268
           from [Arabidopsis thaliana]
          Length = 293

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 482 ENTLYWQTNQFTLKKKIACVQFTRVRSETFKKLKYNYPKCLS 607
           +N +YW  N+F  +K I C  F    +E + KL  N P  LS
Sbjct: 140 DNCMYWIANRFNKEKFILCFDFV---NEEYSKL--NVPMMLS 176


>At2g01220.1 68415.m00034 expressed protein 
          Length = 387

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +1

Query: 307 LCASTYFVQEIHNSRVDRLFVLSDIFATLQENHLK 411
           LC   Y     H S  DR  +L   F  L E HLK
Sbjct: 196 LCCKIYPFSGAHGSDEDRKIILPGSFNPLHEGHLK 230


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
           MRP-like ABC transporter [Arabidopsis thaliana]
           GI:2316016; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1466

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 521 KKKIACVQFTRVRSETFKKLKYNYPKCLSILLV 619
           KK++AC     + +E FK + ++Y K + I  V
Sbjct: 37  KKRVACEDTDAIMNEEFKHISFSYNKLVLICCV 69


>At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2
           [Lycopersicon esculentum] GI:5420276; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 461

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -1

Query: 288 ICTQQYHHTHTP*LRKKCI--ENQYKHNNTL*ISKKIVSSDQFRIYFMKNKQFIK 130
           +   +Y   H P + + C   +N Y  +  L +  +++    F+IY   +K F++
Sbjct: 282 LIASKYEEIHAPRIEEFCFITDNTYTRDQVLEMESQVLKHFSFQIYTPTSKTFLR 336


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,723,937
Number of Sequences: 28952
Number of extensions: 298743
Number of successful extensions: 620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)