Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0823
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    31   0.17 
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   3.7  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   6.5  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   8.6  

>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 304 NTISECLRCLNVNFIFIYGKF 366
           N +S CLRCL +  +FIY +F
Sbjct: 169 NALSHCLRCLFLRHVFIYPRF 189


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +3

Query: 279 FWESTLRSQYNL*VLEVPERKFYFYIW*ILKQTVVLLIVYLNSVIRSCKKIVIRL 443
           + +S++  + N    + PE+    Y+    K  +V L+  L S +RS KKI+I L
Sbjct: 365 YLKSSIVEETNDGYSQAPEQLLQRYVVVPPKLRLVSLVALLRSHVRSYKKIIIFL 419


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 451 TIYKRITIFLQDRITLLRYTINKTTV 374
           T Y+RIT  L DRI+ L  ++N+  +
Sbjct: 382 TYYERITQILLDRISSLSESVNEQNI 407


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 347 FLYMVNSKTDCSFVNCVSQ*CYPILQKNCNSFIDCHNS 460
           FL+ +NS+T  ++ +C+     PIL K  + F++   S
Sbjct: 524 FLFDMNSRTRATYASCL-----PILAKQASKFLNLAQS 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,180
Number of Sequences: 5004
Number of extensions: 45160
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)