Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0823
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016657-11|AAB93655.1|  282|Caenorhabditis elegans Hypothetical...    30   1.5  
AF025471-1|AAB71058.1|  379|Caenorhabditis elegans Hypothetical ...    29   2.6  

>AF016657-11|AAB93655.1|  282|Caenorhabditis elegans Hypothetical
           protein C16C4.10 protein.
          Length = 282

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +3

Query: 30  NTEFRFNPIPWEV*IVTFNIFKWLAIACYK 119
           NTE RFN IPW + I  FN F  L + C K
Sbjct: 164 NTEKRFN-IPWRLQIQRFNEFFGLYLRCEK 192


>AF025471-1|AAB71058.1|  379|Caenorhabditis elegans Hypothetical
           protein R52.3 protein.
          Length = 379

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 30  NTEFRFNPIPWEV*IVTFNIFKWLAIACYK 119
           +T++RFN IPW + I+  N F  L I C K
Sbjct: 244 DTQYRFN-IPWSLKILNRNEFSGLFIRCEK 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,421,632
Number of Sequences: 27780
Number of extensions: 244290
Number of successful extensions: 370
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)