Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0820
         (600 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and glutamine-r...    41   0.019
UniRef50_A7LH31 Cluster: Chordin; n=2; Strongylocentrotus purpur...    33   3.9  
UniRef50_UPI000065CCB2 Cluster: Transient receptor potential cat...    32   9.0  

>UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and
           glutamine-rich; n=4; Endopterygota|Rep: Splicing factor
           proline-and glutamine-rich - Bombyx mori (Silk moth)
          Length = 641

 Score = 41.1 bits (92), Expect = 0.019
 Identities = 30/94 (31%), Positives = 33/94 (35%)
 Frame = +2

Query: 260 NEKATSQSXXXXXXXXXXXXXXXXXXXXXXXXXXXMETTNVPQSTNXXXXXXXXXXXXXX 439
           NEKATSQS                           METTNVPQSTN              
Sbjct: 55  NEKATSQSNQPAEKSNQQQQQQNQPKQQSSRPQQKMETTNVPQSTNQQQQSQQQPQQQQQ 114

Query: 440 XXXXXXXXMATTTTAEPVNAPAKRNLQKILAKPE 541
                   M      +PVNAPAK   Q+   KP+
Sbjct: 115 IPQQQQKQMQQQQQQKPVNAPAKSEPQENTDKPK 148



 Score = 39.9 bits (89), Expect = 0.045
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +3

Query: 207 SRFEHNRPQQGQGGQR 254
           SRFEHNRPQQGQGGQR
Sbjct: 37  SRFEHNRPQQGQGGQR 52


>UniRef50_A7LH31 Cluster: Chordin; n=2; Strongylocentrotus
           purpuratus|Rep: Chordin - Strongylocentrotus purpuratus
           (Purple sea urchin)
          Length = 969

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 88  LCVECKCKP*ITSAIKEDLVDHRNLNGKEVVVVITEDFVIRD 213
           +CV C+C+P +T  I    +  RN+   ++     ED VI+D
Sbjct: 104 VCVVCECRPEVTDGILSGKISCRNIKCPDITCPNDEDPVIKD 145


>UniRef50_UPI000065CCB2 Cluster: Transient receptor potential cation
           channel subfamily M member 4 (Long transient receptor
           potential channel 4) (hTRPM4) (Melastatin-4)
           (Calcium-activated non-selective cation channel 1).;
           n=1; Takifugu rubripes|Rep: Transient receptor potential
           cation channel subfamily M member 4 (Long transient
           receptor potential channel 4) (hTRPM4) (Melastatin-4)
           (Calcium-activated non-selective cation channel 1). -
           Takifugu rubripes
          Length = 615

 Score = 32.3 bits (70), Expect = 9.0
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -1

Query: 177 DLLAVEVAVVHQILFDCRSYSWLAFAFYAQGLSCFDIVIFTLIFIHXQLIH 25
           DL+A+ + ++      CR ++W ++ F  + + C D ++FTL  IH   IH
Sbjct: 282 DLIAIALFIIG---LSCRMFTW-SYEF-GRNILCVDYMVFTLRLIHIFAIH 327


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 393,648,838
Number of Sequences: 1657284
Number of extensions: 5183532
Number of successful extensions: 14897
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14893
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)