Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0820
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51687| Best HMM Match : EMP70 (HMM E-Value=0)                       28   5.0  
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_54826| Best HMM Match : PSRT (HMM E-Value=4.1)                      27   8.8  
SB_20675| Best HMM Match : PSRT (HMM E-Value=4.1)                      27   8.8  

>SB_51687| Best HMM Match : EMP70 (HMM E-Value=0)
          Length = 392

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/76 (22%), Positives = 30/76 (39%)
 Frame = -1

Query: 273 VAFSLLAVDLLVPVEVYYAQISNYEILCYYHDDLLAVEVAVVHQILFDCRSYSWLAFAFY 94
           +   L  +  ++ +      I+ Y       D L      +VH  +F     +WL  AF 
Sbjct: 146 IVLFLSGILAMIMIRTLRRDIARYNKEDDMEDTLEETGWKLVHGDVFRPPQKAWLLTAFI 205

Query: 93  AQGLSCFDIVIFTLIF 46
             G+  F +V+  L+F
Sbjct: 206 GTGVQIFSMVVIILVF 221


>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -1

Query: 285  FDCDVAFSLLAVDLLVPVEVYYA-----QISNYEILCYYHDDLLAVEVAVVHQIL 136
            F C   F+ +   L +P  VY+A      ISN++++   H  L A+   V+H +L
Sbjct: 2660 FSCGGPFNCVP-SLSIPEFVYFACTRDLPISNFDVISTRHVTLQAIPYLVIHAVL 2713


>SB_54826| Best HMM Match : PSRT (HMM E-Value=4.1)
          Length = 113

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 496 CSCKTEPPENS-GQTGNFEPNLPGTHQFIPAY 588
           C C+  PP  S G  G F+      H+F PA+
Sbjct: 61  CFCRYAPPHRSAGYYGLFKDRKENKHKFYPAF 92


>SB_20675| Best HMM Match : PSRT (HMM E-Value=4.1)
          Length = 113

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 496 CSCKTEPPENS-GQTGNFEPNLPGTHQFIPAY 588
           C C+  PP  S G  G F+      H+F PA+
Sbjct: 61  CFCRYAPPHRSAGYYGLFKDRKENKHKFYPAF 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,126,029
Number of Sequences: 59808
Number of extensions: 175343
Number of successful extensions: 376
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)