Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0820
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical ...    28   4.4  

>U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical
           protein W06A11.2 protein.
          Length = 797

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -1

Query: 246 LLVPVEVYY-AQISNYEILCYYHDDLLAVEVAVVHQILFDCRSYSWLAFAFYAQ 88
           LLV ++ +   +  NYE+L  +HDDL   ++  +     D R+Y   AF+F AQ
Sbjct: 631 LLVDLKDFQLTRFQNYEMLKIFHDDLFFSDIKKMPNRWEDNRAYQ--AFSFLAQ 682


>Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical
           protein B0462.1 protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -1

Query: 252 VDLLVPVEVYYAQISNY---EILCYYHDDLLAVEVAVVHQILFDCRSYSWLAFAFYAQGL 82
           +D++  V+  Y   SN    EIL    ++ L  +V  +  ++FDC+S+    F+ YA  +
Sbjct: 340 LDIVYGVQDEYKSYSNQQKAEILKERMEEFLTNDVFYI--VVFDCKSFFTKLFSPYAYVI 397

Query: 81  SC 76
           SC
Sbjct: 398 SC 399


>AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical
           protein Y34B4A.7 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 145 VDHRNLNGKEVVVVITEDFVIRDLSIIDLNRD 240
           VDH ++  + +  +I+  F++  LS++D + D
Sbjct: 144 VDHLSIRAQYIAALISAPFIVSSLSLVDSDND 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,064,006
Number of Sequences: 27780
Number of extensions: 127010
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)