Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0820
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
 Frame = +2

Query: 479  TAEPVNAPAKRNLQKILAKPEIL---------NPIYPEPTNLFQLTSLN 598
            T  P  A   + L K++  P+ L         NP+ P+  +L QLTS++
Sbjct: 880  THRPTFANLTQTLDKLIRSPDTLRKIAQNRGTNPLAPDAVDLTQLTSVS 928


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 1   RRHSFSSCVD*LXVNKY*RKNNNIKTRKSLCV 96
           RRHS S C+    +N   R  N  + R++ C+
Sbjct: 349 RRHSDSCCLCLDSMNAVIRNFNESENRRNSCL 380


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 482 AEPVNAPAKRNLQKILAKPEI 544
           +EPV  P ++N   +  KPE+
Sbjct: 335 SEPVEPPRRKNNCPLHCKPEL 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,817
Number of Sequences: 438
Number of extensions: 1599
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)