Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0820
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24170.1 68415.m02888 endomembrane protein 70, putative simil...    31   0.44 
At3g28956.1 68416.m03618 expressed protein low similarity to SP|...    28   5.4  
At5g62950.1 68418.m07898 expressed protein                             27   7.2  

>At2g24170.1 68415.m02888 endomembrane protein 70, putative similar
           to  MURA transposase of maize Mutator transposon
          Length = 637

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -1

Query: 243 LVPVEVYYAQISNYEILCYYHDDLLAVEVAVVHQILFDCRSYSWLAFAFYAQGLSCFDIV 64
           ++ +   Y  ISNY  L  + + L      +VH  +F   +   L   +   G+ CF ++
Sbjct: 294 MIMLRTLYRDISNYNQLESHEEALEETGWKLVHGDVFRPPTNPELLCVYAGTGVQCFGMI 353

Query: 63  IFTLIF 46
           + T+IF
Sbjct: 354 LVTMIF 359


>At3g28956.1 68416.m03618 expressed protein low similarity to
           SP|O75575 Calcitonin gene-related peptide-receptor
           component protein {Homo sapiens}
          Length = 137

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 467 ATTTTAEPVNAPAKRNLQKILAKPEILNPIYPEPTNLFQL 586
           A+T T E VN  A +     LAK EILN I   P+++ +L
Sbjct: 49  ASTQTRESVNKSADKCKDFKLAKAEILNIINLWPSSIVEL 88


>At5g62950.1 68418.m07898 expressed protein
          Length = 139

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 467 ATTTTAEPVNAPAKRNLQKILAKPEILNPIYPEPTNLFQL 586
           A+T T E +N  A +     LAK EILN I   P+++ +L
Sbjct: 52  ASTQTRESINKFADKCKDFKLAKAEILNIINLRPSSIVEL 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,625,359
Number of Sequences: 28952
Number of extensions: 117578
Number of successful extensions: 326
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)