Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0818
         (666 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    24   0.97 
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    24   0.97 
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   9.1  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 146 FLEVTS-EKHAATKLALKSFNVFKK-FMAEGKASIKFQELIVQY 271
           F+ VT+ +    TKL + ++N F K F   GK+S K ++L+ ++
Sbjct: 175 FIAVTAYQNEKITKLKI-NYNPFAKGFRENGKSSAKRKQLVSEH 217


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 245 KFQELIVQYLFQMHLLQI 298
           +F+E ++ YLF ++LL I
Sbjct: 125 RFEEAVIDYLFTVYLLPI 142


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 354 FLLFITGHLNKYSSKKHYQICR 289
           FLL    +L  Y  +K+ + CR
Sbjct: 18  FLLICDSYLKIYHKEKYRKFCR 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,811
Number of Sequences: 336
Number of extensions: 3424
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)