Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0818
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    27   3.2  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    25   9.8  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   9.8  

>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -2

Query: 479 FEILLFAI*MSATVTGLISSNDWDLP 402
           FE+++  +    T  G+++S++WD+P
Sbjct: 109 FEVVMSRLTSGPTYFGVVNSSEWDIP 134


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 17/80 (21%), Positives = 34/80 (42%)
 Frame = -1

Query: 252 WNLILALPSAINFLKTLKLLRANLVAACFSDVTSKNISRNSFLISLSEPVL**IFLEIEP 73
           W ++  L  A+NF+  L+ +  ++  +        N+    F ++ S PV   + LE + 
Sbjct: 395 WKMLFQLTQALNFIHLLEFVHLDVKPSNVLITRDGNLKLGDFGLATSLPVSSMVDLEGDR 454

Query: 72  *VVVHSTVTAQDKNDSPASI 13
            V +   + A      PA +
Sbjct: 455 -VYIAPEILASHNYGKPADV 473


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 486 NHNTITALKKRKNDDPSRGPAP 551
           NH T  +L+   ND+ S G AP
Sbjct: 35  NHTTQASLQADNNDEQSNGQAP 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,528
Number of Sequences: 5004
Number of extensions: 57170
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)