Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0818
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0347 + 22445962-22446154,22446495-22446616,22446764-224468...    29   4.4  
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366...    28   7.7  
02_05_1019 - 33549576-33550247,33550885-33551121,33551206-335513...    28   7.7  

>09_06_0347 +
           22445962-22446154,22446495-22446616,22446764-22446885,
           22447405-22447594,22447874-22448014,22448257-22448724,
           22448842-22449609,22450185-22450373
          Length = 730

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 219 LWLKVKQVL-SSRS*LYNIYFKCTSYKFGNVSSNYIC 326
           +W  ++ +L S+ S L ++ FK  S  FGNV S +IC
Sbjct: 628 VWTVLEPMLRSASSMLCSLSFKSVSEDFGNVPSYFIC 664


>08_01_0410 +
           3661304-3661383,3661494-3661673,3661757-3661870,
           3661975-3662133,3662193-3662243,3662838-3663018,
           3663102-3663228,3663322-3663431,3663529-3663667,
           3663767-3663876,3664002-3664071,3664247-3664320,
           3664458-3664553,3664682-3664777,3665041-3665168,
           3665422-3665656,3665743-3665910,3666274-3666381,
           3666468-3666617,3666905-3667015,3667118-3667297,
           3667427-3667555,3667819-3667914,3668108-3668293,
           3668431-3668603,3668720-3668921
          Length = 1150

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 2   GTRVMEAGESFLSCAVTVEWTTTQGSISRKIH-YKTGSLRLIR-NEFREMFLEVTSE 166
           GTR+   G S    +  VEW  T+G+I R  + ++  SL +++ +  R  FL    E
Sbjct: 570 GTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTRNRFLAAGDE 626


>02_05_1019 -
           33549576-33550247,33550885-33551121,33551206-33551317,
           33551998-33552215,33553084-33553194
          Length = 449

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 310 LRTIFVKMTSDEEQKANKTPSKQSMXXKLLSG 405
           +R  F  M SD+    + +P KQ++  K++SG
Sbjct: 390 MRESFCSMRSDDSNGEDDSPPKQNLAMKIMSG 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,306,418
Number of Sequences: 37544
Number of extensions: 331317
Number of successful extensions: 781
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)