Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0818
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53823| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   8e-09
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_28108| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)                     28   5.9  
SB_49137| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_53823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
 Frame = +2

Query: 14  MEAGESFLSCAVTVEWTTTQGSISRKIHYKTGSLRLIRNEFREMFLEVTSEKHAATK-LA 190
           ME GE  L C VTVE    +G ++R+  YK  ++ + R+EFR++ L + ++     K   
Sbjct: 1   MEVGE--LDCTVTVESLNARGIVTRRRTYKNVTVLVGRDEFRDIILRIIAKTSPLGKNYR 58

Query: 191 LKSFNVFKKFMAEGKASIKFQELIVQYL 274
           L+   + K+F++EGKA+IK   L +Q L
Sbjct: 59  LREITIHKRFVSEGKATIKLTTLGIQLL 86



 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +1

Query: 268 IFISNAPPTNLVMFLRTIFVKMTSDEEQKANKTPSKQSMXXKLLSGKSQSFDEISPVTVA 447
           + ++N PP  L  FLR I VK+   +E          S   ++ S   ++FD ISP+   
Sbjct: 85  LLLANCPPAKLTAFLRCIVVKLAKKKED------GFASERTRMRSDLPKNFDTISPLVEK 138

Query: 448 D 450
           D
Sbjct: 139 D 139


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +3

Query: 519  KNDDPSR-GPAPKKLYSPSPLTTTNSLNSEQQR 614
            ++++P R  P PK+    SPLT ++SLN+++QR
Sbjct: 941  RSNNPRRIEPKPKQQPFKSPLTRSHSLNTQKQR 973


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 525 DDPSRGPAPKKLYSPSPLTTTNSLNSEQQRVLEACLGGKNIFFTGL 662
           D PS+GP   K Y+ S  T T S      + +   L G N+ +T L
Sbjct: 730 DVPSQGPTEFKGYASSSTTLTFSWGEIPPKSIHGILRGYNLSYTSL 775


>SB_28108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1558

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = +3

Query: 429  KSSYSCRHSYCEK*NFKIYNHNTITALKKRKNDDPSRGPAPKKLYSPSPLTTTNSLNSEQ 608
            KS+ +     CEK N +    N ITA+K R+N   S       L SPS +     ++  +
Sbjct: 1489 KSADALPKRMCEKCNKEKQEGNGITAVKTRRNSSDS------PLSSPSAMRVPRVISDPE 1542

Query: 609  QRVLEACLGGKNI 647
               LEA   G  +
Sbjct: 1543 DAELEASKRGVRV 1555


>SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 5   TRVMEAGESFLSCAVTV-EWTTTQGSISRKIHYKTGSLRLIRNEFREMFLEV 157
           T V  AG   L+  V + +W   +  ISR IH  TG+L+L RN+     L V
Sbjct: 483 TTVPAAGMQNLTPQVPIGKWVELR-EISRNIHLLTGNLQLNRNDIGVRCLHV 533


>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
          Length = 873

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 480 IYNHNTITALKKRKNDDPSRGPAPKKLYSPSPLTTT 587
           I   N+ T L    +D+PS   +   LYSP P+T+T
Sbjct: 740 ISTSNSFTILSTN-HDEPSNSRSTHSLYSPLPVTST 774


>SB_49137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 531 PSRGPAPKKLYSPSPLTTTNSLNSE--QQRVLEACLG 635
           PS G  PK+LYSPS +        E  +QR  EA  G
Sbjct: 130 PSPGAVPKRLYSPSAIKAKEHAKDEADKQRKKEARKG 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,938,870
Number of Sequences: 59808
Number of extensions: 394970
Number of successful extensions: 838
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)