Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0818
(666 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ437529-1|ABD92708.1| 641|Homo sapiens DNA helicase PIF1 protein. 36 0.17
AY498716-1|AAS77398.1| 641|Homo sapiens PIF1/RRM3 DNA helicase-... 36 0.17
AK026345-1|BAB15456.1| 266|Homo sapiens protein ( Homo sapiens ... 36 0.17
AB185927-1|BAE47455.1| 707|Homo sapiens PIF1 DNA helicase isofo... 36 0.17
AB185926-1|BAE47454.1| 641|Homo sapiens PIF1 DNA helicase isofo... 36 0.17
>DQ437529-1|ABD92708.1| 641|Homo sapiens DNA helicase PIF1 protein.
Length = 641
Score = 35.5 bits (78), Expect = 0.17
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 17 EAGESFLSCAVTVEWTTTQGSISRKIHYKTGSLRLIRNEFREMFLEVTSEKHAATK--LA 190
E +S L C V VE + G R+ +T L L RNE RE+ L + + A
Sbjct: 11 EYEDSELRCRVAVEELSPGGQPRRRQALRTAELSLGRNERRELMLRLQAPGPAGRPRCFP 70
Query: 191 LKSFNVFKKFMAEGKASIK 247
L++ +F +F G+++++
Sbjct: 71 LRAARLFTRFAEAGRSTLR 89
Score = 31.9 bits (69), Expect = 2.1
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 PGANCT-IFISNAPPTNLVMFLRTIFVKMTSDEEQKANKTPSKQSMXXKLLSGKSQSFDE 426
PGA + +S+ PP L FLRT+ +K+ A P S +LL + + F
Sbjct: 96 PGAGAVQLLLSDCPPDRLRRFLRTLRLKLA------AAPGPGPASARAQLLGPRPRDFVT 149
Query: 427 ISPV 438
ISPV
Sbjct: 150 ISPV 153
>AY498716-1|AAS77398.1| 641|Homo sapiens PIF1/RRM3 DNA
helicase-like protein protein.
Length = 641
Score = 35.5 bits (78), Expect = 0.17
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 17 EAGESFLSCAVTVEWTTTQGSISRKIHYKTGSLRLIRNEFREMFLEVTSEKHAATK--LA 190
E +S L C V VE + G R+ +T L L RNE RE+ L + + A
Sbjct: 11 EYEDSELRCRVAVEELSPGGQPRRRQALRTAELSLGRNERRELMLRLQAPGPAGRPRCFP 70
Query: 191 LKSFNVFKKFMAEGKASIK 247
L++ +F +F G+++++
Sbjct: 71 LRAARLFTRFAEAGRSTLR 89
Score = 31.9 bits (69), Expect = 2.1
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 PGANCT-IFISNAPPTNLVMFLRTIFVKMTSDEEQKANKTPSKQSMXXKLLSGKSQSFDE 426
PGA + +S+ PP L FLRT+ +K+ A P S +LL + + F
Sbjct: 96 PGAGAVQLLLSDCPPDRLRRFLRTLRLKLA------AAPGPGPASARAQLLGPRPRDFVT 149
Query: 427 ISPV 438
ISPV
Sbjct: 150 ISPV 153
>AK026345-1|BAB15456.1| 266|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22692 fis, clone HSI11184. ).
Length = 266
Score = 35.5 bits (78), Expect = 0.17
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 17 EAGESFLSCAVTVEWTTTQGSISRKIHYKTGSLRLIRNEFREMFLEVTSEKHAATK--LA 190
E +S L C V VE + G R+ +T L L RNE RE+ L + + A
Sbjct: 11 EYEDSELRCRVAVEELSPGGQPRRRQALRTAELSLGRNERRELMLRLQAPGPAGRPRCFP 70
Query: 191 LKSFNVFKKFMAEGKASIK 247
L++ +F +F G+++++
Sbjct: 71 LRAARLFTRFAEAGRSTLR 89
Score = 31.9 bits (69), Expect = 2.1
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 PGANCT-IFISNAPPTNLVMFLRTIFVKMTSDEEQKANKTPSKQSMXXKLLSGKSQSFDE 426
PGA + +S+ PP L FLRT+ +K+ A P S +LL + + F
Sbjct: 96 PGAGAVQLLLSDCPPDRLRRFLRTLRLKLA------AAPGPGPASARAQLLGPRPRDFVT 149
Query: 427 ISPV 438
ISPV
Sbjct: 150 ISPV 153
>AB185927-1|BAE47455.1| 707|Homo sapiens PIF1 DNA helicase isoform
beta protein.
Length = 707
Score = 35.5 bits (78), Expect = 0.17
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 17 EAGESFLSCAVTVEWTTTQGSISRKIHYKTGSLRLIRNEFREMFLEVTSEKHAATK--LA 190
E +S L C V VE + G R+ +T L L RNE RE+ L + + A
Sbjct: 11 EYEDSELRCRVAVEELSPGGQPRRRQALRTAELSLGRNERRELMLRLQAPGPAGRPRCFP 70
Query: 191 LKSFNVFKKFMAEGKASIK 247
L++ +F +F G+++++
Sbjct: 71 LRAARLFTRFAEAGRSTLR 89
Score = 31.9 bits (69), Expect = 2.1
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 PGANCT-IFISNAPPTNLVMFLRTIFVKMTSDEEQKANKTPSKQSMXXKLLSGKSQSFDE 426
PGA + +S+ PP L FLRT+ +K+ A P S +LL + + F
Sbjct: 96 PGAGAVQLLLSDCPPDRLRRFLRTLRLKLA------AAPGPGPASARAQLLGPRPRDFVT 149
Query: 427 ISPV 438
ISPV
Sbjct: 150 ISPV 153
>AB185926-1|BAE47454.1| 641|Homo sapiens PIF1 DNA helicase isoform
alpha protein.
Length = 641
Score = 35.5 bits (78), Expect = 0.17
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 17 EAGESFLSCAVTVEWTTTQGSISRKIHYKTGSLRLIRNEFREMFLEVTSEKHAATK--LA 190
E +S L C V VE + G R+ +T L L RNE RE+ L + + A
Sbjct: 11 EYEDSELRCRVAVEELSPGGQPRRRQALRTAELSLGRNERRELMLRLQAPGPAGRPRCFP 70
Query: 191 LKSFNVFKKFMAEGKASIK 247
L++ +F +F G+++++
Sbjct: 71 LRAARLFTRFAEAGRSTLR 89
Score = 31.9 bits (69), Expect = 2.1
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 PGANCT-IFISNAPPTNLVMFLRTIFVKMTSDEEQKANKTPSKQSMXXKLLSGKSQSFDE 426
PGA + +S+ PP L FLRT+ +K+ A P S +LL + + F
Sbjct: 96 PGAGAVQLLLSDCPPDRLRRFLRTLRLKLA------AAPGPGPASARAQLLGPRPRDFVT 149
Query: 427 ISPV 438
ISPV
Sbjct: 150 ISPV 153
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,659,318
Number of Sequences: 237096
Number of extensions: 1942932
Number of successful extensions: 3684
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3680
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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