Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0818
         (666 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058641-1|AAL13870.1|  663|Drosophila melanogaster LD34105p pro...    89   7e-18
AE014134-611|AAF51102.1|  663|Drosophila melanogaster CG3238-PA ...    89   7e-18
AF247563-1|AAF70257.1|  929|Drosophila melanogaster Scribbler sh...    29   4.3  
AF220145-1|AAF43896.1|  939|Drosophila melanogaster Scribbler pr...    29   4.3  
BT001722-1|AAN71477.1|  929|Drosophila melanogaster RE69316p pro...    29   7.5  
AF247562-1|AAF70256.1| 2302|Drosophila melanogaster Scribbler lo...    29   7.5  
AF242194-1|AAF76322.1| 2302|Drosophila melanogaster brakeless-B ...    29   7.5  
AF242193-1|AAF76321.1|  929|Drosophila melanogaster brakeless-A ...    29   7.5  
AF238858-1|AAF67169.1|  929|Drosophila melanogaster brakeless pr...    29   7.5  
AE013599-2655|AAS64813.1|  929|Drosophila melanogaster CG5580-PC...    29   7.5  
AE013599-2654|AAS64812.1|  939|Drosophila melanogaster CG5580-PB...    29   7.5  
AE013599-2653|AAF57721.1| 2280|Drosophila melanogaster CG5580-PA...    29   7.5  
AB044403-1|BAB20792.1| 2310|Drosophila melanogaster master of th...    29   7.5  
BT023809-1|AAZ66316.1|  505|Drosophila melanogaster RE23714p pro...    28   9.9  

>AY058641-1|AAL13870.1|  663|Drosophila melanogaster LD34105p
           protein.
          Length = 663

 Score = 88.6 bits (210), Expect = 7e-18
 Identities = 40/80 (50%), Positives = 54/80 (67%)
 Frame = +2

Query: 14  MEAGESFLSCAVTVEWTTTQGSISRKIHYKTGSLRLIRNEFREMFLEVTSEKHAATKLAL 193
           M+  ++ L+CAV +EWT   G   RK+ YKT +LRL+RN+ RE+F+EVT EK    K  L
Sbjct: 1   MDLNDAVLTCAVNMEWTNAVGITGRKLAYKTATLRLVRNDLRELFVEVTPEKLKPLKFKL 60

Query: 194 KSFNVFKKFMAEGKASIKFQ 253
           K   V KKFM+EGKA+  F+
Sbjct: 61  KDLMVHKKFMSEGKATFNFK 80



 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
 Frame = +1

Query: 262 CTIFISNAPPTNLVMFLRTIFVKMTSDE-EQKANKTPSKQSMXXKLLSGKSQSFDEISPV 438
           CT+++SNAPP  L+ FLRTIFVKM  +E   + +    ++ +   L+SGK  SF+++SPV
Sbjct: 84  CTLYLSNAPPGTLMFFLRTIFVKMNGNEGGSQPDDATLQKKLREHLMSGKPSSFNDVSPV 143

Query: 439 TVADI 453
           T A++
Sbjct: 144 TTAEM 148



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +3

Query: 525 DDPSRG--PAPKKLYSPSPLTTTNSLNSEQQRVLEACLGGKNIFFTG 659
           ++  RG  PA KKLY+ S    +  L+ EQ  VL AC  GK++FFTG
Sbjct: 181 EEKERGTMPAAKKLYA-STTDESLRLSEEQMEVLRACTSGKSVFFTG 226


>AE014134-611|AAF51102.1|  663|Drosophila melanogaster CG3238-PA
           protein.
          Length = 663

 Score = 88.6 bits (210), Expect = 7e-18
 Identities = 40/80 (50%), Positives = 54/80 (67%)
 Frame = +2

Query: 14  MEAGESFLSCAVTVEWTTTQGSISRKIHYKTGSLRLIRNEFREMFLEVTSEKHAATKLAL 193
           M+  ++ L+CAV +EWT   G   RK+ YKT +LRL+RN+ RE+F+EVT EK    K  L
Sbjct: 1   MDLNDAVLTCAVNMEWTNAVGITGRKLAYKTATLRLVRNDLRELFVEVTPEKLKPLKFKL 60

Query: 194 KSFNVFKKFMAEGKASIKFQ 253
           K   V KKFM+EGKA+  F+
Sbjct: 61  KDLMVHKKFMSEGKATFNFK 80



 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
 Frame = +1

Query: 262 CTIFISNAPPTNLVMFLRTIFVKMTSDE-EQKANKTPSKQSMXXKLLSGKSQSFDEISPV 438
           CT+++SNAPP  L+ FLRTIFVKM  +E   + +    ++ +   L+SGK  SF+++SPV
Sbjct: 84  CTLYLSNAPPGTLMFFLRTIFVKMNGNEGGSQPDDATLQKKLREHLMSGKPSSFNDVSPV 143

Query: 439 TVADI 453
           T A++
Sbjct: 144 TTAEM 148



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +3

Query: 525 DDPSRG--PAPKKLYSPSPLTTTNSLNSEQQRVLEACLGGKNIFFTG 659
           ++  RG  PA KKLY+ S    +  L+ EQ  VL AC  GK++FFTG
Sbjct: 181 EEKERGTMPAAKKLYA-STTDESLRLSEEQMEVLRACTSGKSVFFTG 226


>AF247563-1|AAF70257.1|  929|Drosophila melanogaster Scribbler short
           isoform protein.
          Length = 929

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 486 NHNTITALKKRKNDDPSRGPAPKKLYSPSPLTTTNSLNSEQQR 614
           N+N  +A+KK  N +   G +P    S S L++++S NS + +
Sbjct: 81  NNNNSSAIKKHTNTNKLAGKSPACNSSSSSLSSSSSSNSSESK 123


>AF220145-1|AAF43896.1|  939|Drosophila melanogaster Scribbler
           protein.
          Length = 939

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 486 NHNTITALKKRKNDDPSRGPAPKKLYSPSPLTTTNSLNSEQQR 614
           N+N  +A+KK  N +   G +P    S S L++++S NS + +
Sbjct: 91  NNNNSSAIKKHTNTNKLAGKSPACNSSSSSLSSSSSSNSSESK 133


>BT001722-1|AAN71477.1|  929|Drosophila melanogaster RE69316p
           protein.
          Length = 929

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 486 NHNTITALKKRKNDDPSRGPAPKKLYSPSPLTTTNSLNSEQQR 614
           N+N  +A+KK  N     G +P    S S L++++S NS + +
Sbjct: 81  NNNNSSAIKKHTNTKQLAGKSPACNSSSSSLSSSSSSNSSESK 123


>AF247562-1|AAF70256.1| 2302|Drosophila melanogaster Scribbler long
           isoform protein.
          Length = 2302

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 486 NHNTITALKKRKNDDPSRGPAPKKLYSPSPLTTTNSLNSEQQR 614
           N+N  +A+KK  N     G +P    S S L++++S NS + +
Sbjct: 81  NNNNSSAIKKHTNTKQLAGKSPACNSSSSSLSSSSSSNSSESK 123


>AF242194-1|AAF76322.1| 2302|Drosophila melanogaster brakeless-B
           protein.
          Length = 2302

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 486 NHNTITALKKRKNDDPSRGPAPKKLYSPSPLTTTNSLNSEQQR 614
           N+N  +A+KK  N     G +P    S S L++++S NS + +
Sbjct: 81  NNNNSSAIKKHTNTKQLAGKSPACNSSSSSLSSSSSSNSSESK 123


>AF242193-1|AAF76321.1|  929|Drosophila melanogaster brakeless-A
           protein.
          Length = 929

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 486 NHNTITALKKRKNDDPSRGPAPKKLYSPSPLTTTNSLNSEQQR 614
           N+N  +A+KK  N     G +P    S S L++++S NS + +
Sbjct: 81  NNNNSSAIKKHTNTKQLAGKSPACNSSSSSLSSSSSSNSSESK 123


>AF238858-1|AAF67169.1|  929|Drosophila melanogaster brakeless
           protein protein.
          Length = 929

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 486 NHNTITALKKRKNDDPSRGPAPKKLYSPSPLTTTNSLNSEQQR 614
           N+N  +A+KK  N     G +P    S S L++++S NS + +
Sbjct: 81  NNNNSSAIKKHTNTKQLAGKSPACNSSSSSLSSSSSSNSSESK 123


>AE013599-2655|AAS64813.1|  929|Drosophila melanogaster CG5580-PC,
           isoform C protein.
          Length = 929

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 486 NHNTITALKKRKNDDPSRGPAPKKLYSPSPLTTTNSLNSEQQR 614
           N+N  +A+KK  N     G +P    S S L++++S NS + +
Sbjct: 81  NNNNSSAIKKHTNTKQLAGKSPACNSSSSSLSSSSSSNSSESK 123


>AE013599-2654|AAS64812.1|  939|Drosophila melanogaster CG5580-PB,
           isoform B protein.
          Length = 939

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 486 NHNTITALKKRKNDDPSRGPAPKKLYSPSPLTTTNSLNSEQQR 614
           N+N  +A+KK  N     G +P    S S L++++S NS + +
Sbjct: 91  NNNNSSAIKKHTNTKQLAGKSPACNSSSSSLSSSSSSNSSESK 133


>AE013599-2653|AAF57721.1| 2280|Drosophila melanogaster CG5580-PA,
           isoform A protein.
          Length = 2280

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 486 NHNTITALKKRKNDDPSRGPAPKKLYSPSPLTTTNSLNSEQQR 614
           N+N  +A+KK  N     G +P    S S L++++S NS + +
Sbjct: 81  NNNNSSAIKKHTNTKQLAGKSPACNSSSSSLSSSSSSNSSESK 123


>AB044403-1|BAB20792.1| 2310|Drosophila melanogaster master of thick
           veins protein.
          Length = 2310

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 486 NHNTITALKKRKNDDPSRGPAPKKLYSPSPLTTTNSLNSEQQR 614
           N+N  +A+KK  N     G +P    S S L++++S NS + +
Sbjct: 91  NNNNSSAIKKHTNTKQLAGKSPACNSSSSSLSSSSSSNSSESK 133


>BT023809-1|AAZ66316.1|  505|Drosophila melanogaster RE23714p
           protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +2

Query: 116 RLIRNEFREMFLEVTSEKHAATKLALKSFNVFKKFMAEGKASIKFQELIVQYLF 277
           R+ ++E   + L V  E +++ K+ +    +FK   A   A   F  + V Y+F
Sbjct: 243 RITKDELNYIELNVKKEVNSSVKVKVPWLQIFKSIPAWAIAITTFGRIFVHYIF 296


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,320,321
Number of Sequences: 53049
Number of extensions: 580044
Number of successful extensions: 1551
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2868730650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)