Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0818
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53335-4|AAL27231.1|  504|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF098985-1|AAC67419.2|  882|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z66500-11|CAC42334.1|  625|Caenorhabditis elegans Hypothetical p...    27   9.1  
Z66500-10|CAB61022.1|  666|Caenorhabditis elegans Hypothetical p...    27   9.1  
Z66500-9|CAA91307.1|  672|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF070920-1|AAC24231.1|  554|Caenorhabditis elegans cytoplasmic s...    27   9.1  
AF063244-1|AAC16434.1|  666|Caenorhabditis elegans cytoplasmic s...    27   9.1  

>U53335-4|AAL27231.1|  504|Caenorhabditis elegans Hypothetical
           protein C55C3.3 protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 537 RGPAPKKLYSPSPLTTTNSLNSEQQRV 617
           +GPA + L  PSP+   N  NSE  +V
Sbjct: 242 KGPAEQSLSEPSPVPGNNRRNSETSQV 268


>AF098985-1|AAC67419.2|  882|Caenorhabditis elegans Hypothetical
           protein C08G5.1 protein.
          Length = 882

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 238 CFTFSHKLFENIETFK 191
           C TF HKLFE++  FK
Sbjct: 246 CTTFKHKLFESLSKFK 261


>Z66500-11|CAC42334.1|  625|Caenorhabditis elegans Hypothetical
           protein T05C12.6c protein.
          Length = 625

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 510 KKRKNDDPSRGPAPKKLYSPSPLT--TTNSLNSEQQRVLEACLGGKNIFFTGL 662
           ++RK     R   P   Y PS ++  T +S+NS   R+LE  L  KN+ + GL
Sbjct: 190 RRRKKQKKERFRRP---YVPSTISSATESSVNSGLPRILEIYLPMKNVPYLGL 239


>Z66500-10|CAB61022.1|  666|Caenorhabditis elegans Hypothetical
           protein T05C12.6b protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 510 KKRKNDDPSRGPAPKKLYSPSPLT--TTNSLNSEQQRVLEACLGGKNIFFTGL 662
           ++RK     R   P   Y PS ++  T +S+NS   R+LE  L  KN+ + GL
Sbjct: 190 RRRKKQKKERFRRP---YVPSTISSATESSVNSGLPRILEIYLPMKNVPYLGL 239


>Z66500-9|CAA91307.1|  672|Caenorhabditis elegans Hypothetical
           protein T05C12.6a protein.
          Length = 672

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 510 KKRKNDDPSRGPAPKKLYSPSPLT--TTNSLNSEQQRVLEACLGGKNIFFTGL 662
           ++RK     R   P   Y PS ++  T +S+NS   R+LE  L  KN+ + GL
Sbjct: 190 RRRKKQKKERFRRP---YVPSTISSATESSVNSGLPRILEIYLPMKNVPYLGL 239


>AF070920-1|AAC24231.1|  554|Caenorhabditis elegans cytoplasmic
           signalling transducer protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 510 KKRKNDDPSRGPAPKKLYSPSPLT--TTNSLNSEQQRVLEACLGGKNIFFTGL 662
           ++RK     R   P   Y PS ++  T +S+NS   R+LE  L  KN+ + GL
Sbjct: 119 RRRKKQKKERFRRP---YVPSTISSATESSVNSGLPRILEIYLPMKNVPYLGL 168


>AF063244-1|AAC16434.1|  666|Caenorhabditis elegans cytoplasmic
           signalling transducer protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 510 KKRKNDDPSRGPAPKKLYSPSPLT--TTNSLNSEQQRVLEACLGGKNIFFTGL 662
           ++RK     R   P   Y PS ++  T +S+NS   R+LE  L  KN+ + GL
Sbjct: 190 RRRKKQKKERFRRP---YVPSTISSATESSVNSGLPRILEIYLPMKNVPYLGL 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,469,081
Number of Sequences: 27780
Number of extensions: 316769
Number of successful extensions: 892
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)