Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0818
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31980.1 68417.m04547 expressed protein contains Pfam profile...    31   0.52 
At5g13340.1 68418.m01535 expressed protein                             29   2.8  
At4g30560.1 68417.m04337 cyclic nucleotide-regulated ion channel...    28   4.9  
At5g52990.1 68418.m06581 vesicle-associated membrane protein-rel...    27   8.5  
At2g07050.1 68415.m00806 cycloartenol synthase (CAS1) / 2,3-epox...    27   8.5  
At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot...    27   8.5  
At1g15280.2 68414.m01829 glycine-rich protein                          27   8.5  
At1g15280.1 68414.m01828 glycine-rich protein                          27   8.5  

>At4g31980.1 68417.m04547 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 680

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -1

Query: 324 KYSSKKHYQICRRCI*NKYCTISSWNLI-LALPSAINFLKTLKLLRANLVAACFSDVTSK 148
           +Y   K++ I R C  N +C   S  L   ++PS +N L  L  L   ++ AC ++   K
Sbjct: 103 EYQGNKYHLITRNC--NHFCNHVSLKLTHKSIPSWVNRLARLGFLCNCVLPACLNETKVK 160

Query: 147 NISRNSFLI 121
            + ++  L+
Sbjct: 161 RVGKDGKLL 169


>At5g13340.1 68418.m01535 expressed protein
          Length = 242

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 519 KNDDPSRGPAPKKLYSPSPLTTTNSLNSEQQR 614
           +ND  SR P+ ++ YS SP+T  +S  + + R
Sbjct: 3   RNDSRSRSPSHRRRYSRSPVTHRSSRRTRRDR 34


>At4g30560.1 68417.m04337 cyclic nucleotide-regulated ion channel,
           putative similar to cyclic nucleotide and
           calmodulin-regulated ion channel cngc6 GI:4581207 from
           [Arabidopsis thaliana]
          Length = 733

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 40  LCCNSGMDYHSRFYF*ENSLQDGFA 114
           +C NS +D H  F F  N   DG+A
Sbjct: 311 VCSNSSLDCHRNFLFCGNEKMDGYA 335


>At5g52990.1 68418.m06581 vesicle-associated membrane
           protein-related contains weak similarity to
           vesicle-associated membrane protein 722 (AtVAMP722)
           (Synaptobrevin- related protein 1) (Swiss-Prot:P47192)
           [Arabidopsis thaliana]
          Length = 272

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +2

Query: 323 LLR*PVMKSKKQIKLHQNSQ*XQSC*VVNPNHLM-K*VQL--QLPTFILRKVKFQNLQSQ 493
           LL  P+   KK+ +LH  ++   SC V +   +  K V L       +LRK     L S 
Sbjct: 168 LLGKPLKALKKKKRLHNEAKGGDSCEVGSIQEISEKNVDLCGNGNNGVLRKELRNGLLSD 227

Query: 494 HHHRLK 511
           HHHR K
Sbjct: 228 HHHRQK 233


>At2g07050.1 68415.m00806 cycloartenol synthase (CAS1) /
           2,3-epoxysqualene--cycloartenol cyclase /
           (S)-2,3-epoxysqualene mutase identical to cycloartenol
           synthase [SP:P38605 | GI:452446] [PMID:7505443]
          Length = 759

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 348 LFITGHLNKYSSKKHYQICRRCI*NKYCTISSWNLILALPSAI 220
           L ITG LN   S++H Q  RR + N       W L +  PS +
Sbjct: 132 LSITGALNTVLSEQHKQEMRRYLYNHQNEDGGWGLHIEGPSTM 174


>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein 2
            (PCAT2) contains Pfam domains PF02135: TAZ zinc finger
            and PF00569: Zinc finger, ZZ type; identical to cDNA
            p300/CBP acetyltransferase-related protein 2  GI:12597460
          Length = 1691

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 357  CFLLFITGHLNKYSSKKHYQICRRC 283
            C +L ++G+    S  KH+QIC +C
Sbjct: 1401 CCILMVSGNRWVCSQCKHFQICDKC 1425


>At1g15280.2 68414.m01829 glycine-rich protein
          Length = 585

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 534 SRGPAPKKLYSPSPLTTTNSLNSEQQRVLEACLGGKN 644
           SRG  P+K  S +PL   N  +SEQ + L    G +N
Sbjct: 210 SRGRGPRK--SDTPLRNENQAHSEQSKQLRNSNGSQN 244


>At1g15280.1 68414.m01828 glycine-rich protein
          Length = 584

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 534 SRGPAPKKLYSPSPLTTTNSLNSEQQRVLEACLGGKN 644
           SRG  P+K  S +PL   N  +SEQ + L    G +N
Sbjct: 209 SRGRGPRK--SDTPLRNENQAHSEQSKQLRNSNGSQN 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,371,307
Number of Sequences: 28952
Number of extensions: 286370
Number of successful extensions: 784
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)