Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0817
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    28   0.89 
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    26   3.6  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    26   3.6  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    26   4.7  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    25   6.2  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   8.3  
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    25   8.3  

>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 226 VFYFFINPFNATRLQRIFGWIP--TYWNPFYQCLCTAI 119
           VF F I+ F    L + F   P  T+W   +  LCTAI
Sbjct: 403 VFAFSISVFLVLHLTQAFHVCPSVTFWKTLFMSLCTAI 440


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +3

Query: 267 IPIISYMYVNYRSIFTVSVL-SSYLRKIYHANKELLLYNEIGLSFHRYLTNYPCLNYMGI 443
           IPI S  +  YRS F V +L +S    +  +     L+    L F+R+ +N+  + ++G+
Sbjct: 274 IPIRSQKFRGYRSTFPVKLLYTSNTPIMLQSALTSNLFFASRLLFNRFSSNF-LVRFLGV 332

Query: 444 SEQS 455
            EQ+
Sbjct: 333 WEQT 336


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 363 ELLLYNEIGLSFHRYLTNYPCLNYMGISEQ 452
           E  ++N I   FH  ++ + C NY  + EQ
Sbjct: 214 EKRMFNRIISGFHASISTHVCQNYYDVEEQ 243


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 142 YQCLCTAIPIKSADKEIFSREYRYWITFFNPRIVKTRMKEALIRSCA 2
           Y C       K+++  I S +  +W  FF+P  +K    + L +  A
Sbjct: 156 YNCTFAVCDSKTSNVSIISAQAYFWSCFFSPSKLKITDAKPLAKVAA 202


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 279 SYMYVNYRSIFTVSVL-SSYLRKIYHANKELLLYNEIGLSFHRYLTNYPCLN 431
           ++++     +F +SV+ S+ +R    + K+  +Y E    F RY+ +  C+N
Sbjct: 302 NFLFFYEMGLFNISVIYSNRIRMSRCSQKDAQIYQEWYSFFPRYVYSTNCMN 353


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 382  SLYSKSSLFAWYIFR 338
            S+Y+ SS+F WY++R
Sbjct: 1969 SIYTVSSVFWWYLYR 1983


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 139 QCLCTAIPIKSADKEIFSREYRYW 68
           QC   ++P+ S D+E    + RYW
Sbjct: 320 QCTYESMPVSSKDEEWKGAKRRYW 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,983
Number of Sequences: 5004
Number of extensions: 55030
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)