Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0817
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1289 - 35470076-35470243,35471032-35471108,35471935-354719...    34   0.097
02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805     29   2.8  

>02_05_1289 -
           35470076-35470243,35471032-35471108,35471935-35471971,
           35472559-35472618,35472693-35472769,35473244-35473364,
           35473505-35473597,35473708-35473770,35475195-35475245,
           35475384-35475511,35476249-35476343,35476345-35476427,
           35476653-35476808,35477046-35477182,35477243-35477252,
           35477291-35477380,35477771-35478070,35479054-35479120,
           35479382-35479469,35480317-35480373,35480469-35480592
          Length = 693

 Score = 33.9 bits (74), Expect = 0.097
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 312 TVSVLSSYLRKIYHANKELLLYNEIGLSFHRYLTNYPC 425
           TV+  S  +  I   + +++ +N + LSF R++TN+PC
Sbjct: 567 TVARTSIDINLISKDSSKVIFFNNVNLSFFRFITNFPC 604


>02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805
          Length = 456

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 260 RTYPYNFIYVCKLPFYIHGFCTLVIFTEN 346
           R YP   I+  K P ++ G CTLV   +N
Sbjct: 393 RIYPLLMIWPPKFPAHLTGLCTLVYLVDN 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,100,451
Number of Sequences: 37544
Number of extensions: 269804
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)