Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0817
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53338| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_41099| Best HMM Match : VWA (HMM E-Value=0)                         29   2.8  
SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         28   6.6  
SB_9604| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)                     28   6.6  
SB_49630| Best HMM Match : UBX (HMM E-Value=3.8)                       28   6.6  
SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   6.6  
SB_4171| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)                     28   6.6  

>SB_53338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 269 PYNFIYVCKLPFYIHGFCTLVIFTENIP 352
           PY F+Y  KL  Y + F   +I+T  IP
Sbjct: 240 PYKFVYFTKLLQYTNSFVNPIIYTFKIP 267


>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3373

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 71  IPIFAAKDFFIRGFYRYSGT*TLIKRIPICRYPT 172
           + +FA++ + I GF+RY     +++ I   RYP+
Sbjct: 822 VAVFASRPYTIFGFHRYRTLGQVVRAIKYIRYPS 855


>SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 242 LFILYLR-TYPYNFIYVCKLPFYIHGFCTLVIFTENIPRE*RA 367
           L ILY + T  YN IY  KL  Y + F   +IF   + RE RA
Sbjct: 207 LIILYTKFTVSYNTIYAFKLLHYSNSFVNPIIFVIKM-REFRA 248


>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +2

Query: 50  WIKKCDPIPIFAAKDFFIRGFYRYSGT*TLIKRIPICRYPTE 175
           W+K  D +  +  KD F      YS     IKR P CRYP E
Sbjct: 503 WLKYADQLSEYQRKDLF------YS---VYIKRCPHCRYPIE 535


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 71   IPIFAAKDFFIRGFYRYSGT*TLIKRIPICRYP 169
            + +F+++ F I GFY+ S    + K+I   RYP
Sbjct: 2472 VSLFSSRPFKIIGFYQSSSRRVVFKKIDGIRYP 2504


>SB_9604| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)
          Length = 317

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 285 MYVNYRSIFTVSVLSSYLRKIYHAN--KELLLYN 380
           +YVNYR +  + + S +L KI +    K L+ YN
Sbjct: 173 LYVNYRPVSVLPIFSKFLEKIMYDRLYKFLIKYN 206


>SB_49630| Best HMM Match : UBX (HMM E-Value=3.8)
          Length = 215

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 21  ASFIRVF-TIRGLKNVIQYLYSRLKIS 98
           AS  R F TI+ L+NV QY+YSR  I+
Sbjct: 48  ASLKREFGTIQSLENVYQYIYSRHNIN 74


>SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 979

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 21  ASFIRVF-TIRGLKNVIQYLYSRLKIS 98
           AS  R F TI+ L+NV QY+YSR  I+
Sbjct: 850 ASLKREFGTIQSLENVYQYIYSRHNIN 876


>SB_4171| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)
          Length = 243

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 285 MYVNYRSIFTVSVLSSYLRKIYHAN--KELLLYN 380
           +YVNYR +  + + S +L KI +    K L+ YN
Sbjct: 99  LYVNYRPVSVLPIFSKFLEKIMYDRLYKFLIKYN 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,307,775
Number of Sequences: 59808
Number of extensions: 347048
Number of successful extensions: 599
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)