Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0817
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80451-2|AAB37837.1|  223|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical ...    30   1.1  
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    29   2.5  
Z81107-6|CAB03230.1|  342|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>U80451-2|AAB37837.1|  223|Caenorhabditis elegans Hypothetical
           protein F11G11.5 protein.
          Length = 223

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 239 CLFILYLRTYPYNFIYVCKLPFYIHGFCT 325
           CL +L + T+P+  I++C +P  +   CT
Sbjct: 189 CLIMLTIFTFPFGLIFLCCVPCTVQNRCT 217


>AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical
           protein T12B3.2 protein.
          Length = 478

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 277 FHICM*ITVLYSRFLYSRHIYGKYTTRIKSFYC 375
           FHIC  IT  ++ F   ++I+G Y+  +  + C
Sbjct: 8   FHICAFITWQFANFFAGQNIFGIYSNNVSKWKC 40


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/77 (19%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +3

Query: 288 YVNYRSIFTVSVLSSYLRKIYHANKELLLYNEIGLSFHRYLTNYPCLNYMGISEQSDFNV 467
           Y+NY+ ++T+     +   +    +E+    E+GL +  Y T     +++   ++   + 
Sbjct: 40  YINYQHVYTLFENDKHFSHLADFEREMAYRTEMGLYYSYYKTIINAPSFLEGVQEITHDT 99

Query: 468 V*KSTYQIN-IGHFHVY 515
           V +  ++IN +  F++Y
Sbjct: 100 VTEHGHEINTLNRFNLY 116


>Z81107-6|CAB03230.1|  342|Caenorhabditis elegans Hypothetical
           protein R07H5.8 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 162 GIQPNILCKRVALNGLIKK*NTTMPSVCLF 251
           G++ ++ C   A   +IKK   T+PSVC +
Sbjct: 312 GVEASVTCGSYAAQEIIKKHGCTVPSVCKY 341


>Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical
           protein F15D4.4 protein.
          Length = 608

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 485 PN*YWSFSCIFPFTVPSAFNCRSVG 559
           P+  W F C+F  TV     CRS G
Sbjct: 4   PHLIWLFVCVFQSTVVQGSTCRSDG 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,325,521
Number of Sequences: 27780
Number of extensions: 282934
Number of successful extensions: 572
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)