Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0817
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   6.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   6.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.8  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 30  IRVFTIRGLKNVIQYLYSRLKISL 101
           +RV+TI GLK  I+++ +   I+L
Sbjct: 147 LRVYTISGLKRPIRFILAAWLIAL 170


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 589 KNGFNLNYAMADTSTIKCTWYGK 521
           K  +NL Y +A  +    TWY +
Sbjct: 38  KKVYNLLYRVAQPALANITWYNE 60


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 589 KNGFNLNYAMADTSTIKCTWYGK 521
           K  +NL Y +A  +    TWY +
Sbjct: 38  KKVYNLLYRVAQPALANITWYNE 60


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 387 GLSFHRYLTNYPC 425
           G+ FH Y+   PC
Sbjct: 360 GIQFHLYINTAPC 372


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 405 YLTNYPCLNYMGISEQSDFNVV*KSTYQINIGHFHVYS 518
           Y+ N+  + Y+G     D N +  +   IN    H +S
Sbjct: 312 YMDNWKMMMYLGTPVMPDLNALIATGLYINDLSMHDFS 349


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 29  HSRFHYSWIKKCDPIP 76
           H R + ++   CDP+P
Sbjct: 68  HHRLYPAFSSSCDPVP 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,845
Number of Sequences: 438
Number of extensions: 4444
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)