Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0817
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16785.1 68416.m02143 phospholipase D zeta1 / PLDzeta1 (PLDP1...    28   4.1  
At5g51920.1 68418.m06441 expressed protein ; expression supporte...    27   7.1  
At5g47690.1 68418.m05887 expressed protein                             27   7.1  
At3g04980.1 68416.m00541 DNAJ heat shock N-terminal domain-conta...    27   7.1  
At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containi...    27   9.4  

>At3g16785.1 68416.m02143 phospholipase D zeta1 / PLDzeta1 (PLDP1)
           identical to phospholipase D zeta1 [Arabidopsis
           thaliana] GI:15723315, SP|Q9LRZ5 Phospholipase D p1 (EC
           3.1.4.4) (AtPLDp1) (Phospholipase D1 PHOX and PX
           containing domain) (Phospholipase D zeta 1) (PLDzeta1)
           {Arabidopsis thaliana}; supported by cDNA gi:15723314;
           non-consensus splice site (GC) at the beginning of first
           intron.
          Length = 1096

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 339 RKIYHANKELL--LYNEIGLSFHRYLTNYPCLNYMGISE 449
           R IY  +  +L  LYN IG+  H Y++ Y    Y  +SE
Sbjct: 847 RTIYRGHNSILTNLYNTIGVKAHDYISFYGLRAYGKLSE 885


>At5g51920.1 68418.m06441 expressed protein ; expression supported
           by MPSS
          Length = 570

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 396 FHRYLTNYPCLNYMGISEQSDFNVV--*KSTYQIN 494
           FH  L++Y CL+Y+GI   S   ++    STYQI+
Sbjct: 101 FHLGLSHYTCLDYIGIGLYSYSQLLNYDPSTYQIS 135


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +3

Query: 261 ERIPIISYMYVNYRSIFTVSVLSSYLRKIYHANKELLLYNEIGLSFHRYLTNYPCLNYMG 440
           + + I+S  +  Y  + T+S+  SYL       KE+L    +  S    L   PC++++G
Sbjct: 577 DMLKILSEKHSLYDFLSTLSIKCSYLLFSKEYVKEILAEVSVRKSSKNTLGIQPCMDFLG 636

Query: 441 I 443
           +
Sbjct: 637 L 637


>At3g04980.1 68416.m00541 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 1165

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 391 NPISLYSKSSLFAWYIFRKYDESTETVNIER*FTYIYEIIGIRS*VQNKQTLGI 230
           N +S+Y +     W IFR+++E   T   +  F Y Y+ + I S   +   +G+
Sbjct: 572 NIVSIYPRKGEI-WAIFREWEEEWNTSLKKHKFPYKYDFVEIVSDFHDLNGVGV 624


>At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 521

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +3

Query: 270 PIISYMYVNYRSIFTVSVLSSYLRKIYHANKELLLYNEIGLSFHRYLTNYPCLNYMGISE 449
           P+ S +  +  SIF+ +  S +     +A  E L  NEI LSF + LT  P      IS+
Sbjct: 38  PLFSPLPPSRSSIFS-TFPSRFFSSETNAESESLDSNEIALSFSKELTGNPDAESQTISQ 96

Query: 450 Q 452
           +
Sbjct: 97  R 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,253,069
Number of Sequences: 28952
Number of extensions: 248755
Number of successful extensions: 436
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)