Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0816
         (540 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6P9F7 Cluster: Leucine-rich repeat-containing protein ...    32   9.7  

>UniRef50_Q6P9F7 Cluster: Leucine-rich repeat-containing protein 8B;
           n=37; Euteleostomi|Rep: Leucine-rich repeat-containing
           protein 8B - Homo sapiens (Human)
          Length = 803

 Score = 31.9 bits (69), Expect = 9.7
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +3

Query: 279 IYIIYLKRIFASTLLFVLI*TEVQQFLSN 365
           IY +YLK+I    +LFVLI T V  FL++
Sbjct: 254 IYRVYLKQIIVKVILFVLIITYVPYFLTH 282


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,287,220
Number of Sequences: 1657284
Number of extensions: 9423834
Number of successful extensions: 15965
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 15659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15962
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)