Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0816
         (540 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   5.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   5.2  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   6.9  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   6.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.2  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 258 VVGIIKFHGYSRNISTIPI 202
           V+  + F G+  N+S+IPI
Sbjct: 565 VIPFLLFGGFFLNVSSIPI 583


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 258 VVGIIKFHGYSRNISTIPI 202
           V+  + F G+  N+S+IPI
Sbjct: 565 VIPFLLFGGFFLNVSSIPI 583


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -2

Query: 443 CFWWIKNPPGSPIN 402
           CF+W+   P  P++
Sbjct: 318 CFYWLNEIPTMPVS 331


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 44  NYNVTSAVPIVT 9
           +YN  SAVPIVT
Sbjct: 498 DYNDLSAVPIVT 509


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +2

Query: 116 VKNGDKNHSF 145
           ++NG+K+HSF
Sbjct: 201 LRNGEKHHSF 210


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,770
Number of Sequences: 336
Number of extensions: 2481
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)