Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0816
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   5.4  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    25   7.2  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 282 YIIYLKRIFASTLLFVLI*TEVQQFLSNA 368
           Y I+L+R +A  +LFV+     +Q+L ++
Sbjct: 108 YFIFLQRFYAHAILFVMELFNKEQYLQSS 136


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 532 NFRDITLDKKRRPLSFC*TQIGDKN*MGLDVFG 434
           N RD  LDK  RPL    T + D+N    +VFG
Sbjct: 219 NTRDKILDKNNRPLQPF-TIVSDRNETRKNVFG 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,416
Number of Sequences: 5004
Number of extensions: 42667
Number of successful extensions: 76
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)