Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0816
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80952-2|AAB38094.1|  309|Caenorhabditis elegans Muscle attachme...    28   4.9  
U80952-1|AAU20846.1|  315|Caenorhabditis elegans Muscle attachme...    28   4.9  
AL132943-6|CAC14393.1|  511|Caenorhabditis elegans Hypothetical ...    27   6.5  

>U80952-2|AAB38094.1|  309|Caenorhabditis elegans Muscle attachment
           abnormal protein1, isoform a protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 431 IKNPPGSPINNLRPLTSRLP 372
           I+ PP SP N+  PL S+LP
Sbjct: 149 IETPPSSPENSFGPLASQLP 168


>U80952-1|AAU20846.1|  315|Caenorhabditis elegans Muscle attachment
           abnormal protein1, isoform b protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 431 IKNPPGSPINNLRPLTSRLP 372
           I+ PP SP N+  PL S+LP
Sbjct: 155 IETPPSSPENSFGPLASQLP 174


>AL132943-6|CAC14393.1|  511|Caenorhabditis elegans Hypothetical
           protein Y116F11B.11 protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 198 LPSKTIEIFIIIDR*DYRKE*FLSPFLTVN*KRSFKRISFQNLNSSPTV 52
           +P+K + +FI   + +   E FL     V   RS  + S QN+   P +
Sbjct: 271 MPTKEMAVFICFQKLEKDSEKFLKVIQVVQQLRSLNKDSVQNIQQIPPI 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,648,698
Number of Sequences: 27780
Number of extensions: 230593
Number of successful extensions: 411
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)