Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0816
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09210.1 68418.m01043 hypothetical protein                          29   2.0  
At2g31865.2 68415.m03893 poly (ADP-ribose) glycohydrolase (PARG)...    28   3.5  
At2g31865.1 68415.m03892 poly (ADP-ribose) glycohydrolase (PARG)...    28   3.5  
At5g48340.1 68418.m05973 expressed protein                             27   6.1  
At3g09970.1 68416.m01196 calcineurin-like phosphoesterase family...    27   8.0  

>At5g09210.1 68418.m01043 hypothetical protein
          Length = 603

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/57 (28%), Positives = 22/57 (38%)
 Frame = -3

Query: 418 PVRQSITXXXXXXXXX*AFERNCCTSVYIKTNNNVEANIRFRYIIYILIHNIKRCWD 248
           P+ Q +              R  C S  + TN N  + +     + IL H I RCWD
Sbjct: 347 PLHQDVDFSDMNWHGLLFHSRIVCGSTPVCTNPNFVSELVKYVAVPILHHRIVRCWD 403


>At2g31865.2 68415.m03893 poly (ADP-ribose) glycohydrolase (PARG)
           family protein contains Pfam profile: PF05028 poly
           (ADP-ribose) glycohydrolase (PARG)
          Length = 532

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 334 YKRKCNNFFQMLRGSLEVNGLRLLIGEPGGFFIHQKHLIPFNFYPQFVS-NKNSGDASSC 510
           Y R C      ++  +   G R+    P GF   ++ ++P  ++P FVS  K    A+S 
Sbjct: 183 YMRHCTKQENKIKCLIHYFG-RICRWMPTGFVSFERKILPLEYHPHFVSYPKADSWANSV 241

Query: 511 LGLC 522
             LC
Sbjct: 242 TPLC 245


>At2g31865.1 68415.m03892 poly (ADP-ribose) glycohydrolase (PARG)
           family protein contains Pfam profile: PF05028 poly
           (ADP-ribose) glycohydrolase (PARG)
          Length = 522

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 334 YKRKCNNFFQMLRGSLEVNGLRLLIGEPGGFFIHQKHLIPFNFYPQFVS-NKNSGDASSC 510
           Y R C      ++  +   G R+    P GF   ++ ++P  ++P FVS  K    A+S 
Sbjct: 183 YMRHCTKQENKIKCLIHYFG-RICRWMPTGFVSFERKILPLEYHPHFVSYPKADSWANSV 241

Query: 511 LGLC 522
             LC
Sbjct: 242 TPLC 245


>At5g48340.1 68418.m05973 expressed protein
          Length = 510

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = -1

Query: 219 ISTIPINLPSKTIEIFIIIDR*DYRKE*FLSPFLTVN*KRSFKRISF 79
           +STI I+ PSK + IF+ + R   RK  FLS  LT+  ++  +++ F
Sbjct: 55  LSTISIS-PSKQLNIFMKLLRSKPRKMQFLSQVLTMMFEKRPRKLGF 100


>At3g09970.1 68416.m01196 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 Calcineurin-like
           phosphoesterase
          Length = 309

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 373 GSLEVNGLRLLIGEPGGF 426
           G L ++G+RL+I E GGF
Sbjct: 268 GKLHIDGMRLIIDEGGGF 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,807,787
Number of Sequences: 28952
Number of extensions: 207387
Number of successful extensions: 310
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)