Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0815
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    35   0.009
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    31   0.11 
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    29   0.46 
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   4.2  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    26   5.6  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   9.8  

>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 11  KITSFPTIKLYSKDNQVHD--YNGERTLAGLTKFVETDGEGAEPGPSVTEFEEEEDVPAR 184
           ++ SFPTIK + KD++     Y G+R+L  L +++     G +  P  T       +P  
Sbjct: 211 EVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKK-SGTQRSPDGTLLSTAGRIPTF 269

Query: 185 DE 190
           DE
Sbjct: 270 DE 271


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +2

Query: 14  ITSFPTIKLYSKDNQVHD--YNGERTLAGLTKFVETDGEGAEPGPSVTEFEEEEDVPARD 187
           I+ FPTI  +  +++V+   Y G+RTL  L+ F++      EP       +E+E VPA D
Sbjct: 424 ISGFPTIMFFKANDKVNPVRYEGDRTLEDLSAFIDKHA-SFEPIK-----KEKESVPAPD 477



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 14  ITSFPTIKLYSKDNQVHDYNGERTLAGLTKFV 109
           I  +PT+ ++    Q+  Y+G R    L K++
Sbjct: 92  IRGYPTLNVFKNGKQISQYSGPRKHDALVKYM 123


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
 Frame = +2

Query: 11  KITSFPTIKLY---SKDNQVH--DYNGERTLAGLTKFV 109
           ++  FPTIKL    SK + +   DYNG+R+   L KFV
Sbjct: 101 QVQGFPTIKLVYPSSKGSSLSSTDYNGDRSYKSLQKFV 138


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 23  FPTIKLYSKDNQVHDYNGERTLAGLTKFVE 112
           FPT+      +Q+++Y GE    GL  ++E
Sbjct: 526 FPTVYFTKISDQINNYEGELPTDGLKYYIE 555


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 81  GHWPASPSSLRPTVK 125
           G+WP  PSS+RP  K
Sbjct: 384 GNWPNYPSSIRPLAK 398


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = +2

Query: 44  SKDNQVHDYNGERTLAGLTKFVETDGEGAEPGPSVTEFEEEEDV 175
           S+D    D       AG   F  TD     PG  V EF  EED+
Sbjct: 106 SEDVSWQDLKDVMRKAGEPTF--TDAHRENPGAGVVEFSTEEDM 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,092
Number of Sequences: 5004
Number of extensions: 49705
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)