Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0815
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0621 - 9923163-9923245,9924163-9924338,9924437-9924495,992... 32 0.47
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323... 31 0.62
04_03_1011 - 21708503-21708544,21708689-21708898,21709000-217091... 30 1.9
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383... 29 2.5
09_01_0007 + 212984-213949 29 4.4
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 29 4.4
06_01_0084 + 675185-677389 28 5.8
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204... 28 7.7
>03_02_0621 -
9923163-9923245,9924163-9924338,9924437-9924495,
9924952-9924984,9925060-9925185
Length = 158
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 14 ITSFPTIKLYSKDNQVHDYNGERTLAGLTKFVETDGEGA 130
I S+PT K++ + +V Y G R + L FV + E A
Sbjct: 112 IHSYPTFKVFYEGEEVAKYKGPRNVESLKNFVSDEAEKA 150
>05_01_0410 -
3234455-3234466,3234851-3234950,3235037-3235161,
3235244-3235400,3235644-3235735,3235828-3235855,
3235949-3236066,3236411-3236466,3236556-3236653,
3236864-3236948,3237428-3237600
Length = 347
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 14 ITSFPTIKLYSKDNQV-HDYNGERTLAGLTKFV 109
++ FPT+K + K N+ DY+G R L KF+
Sbjct: 220 VSGFPTLKFFPKGNKAGEDYDGGRELDDFVKFI 252
>04_03_1011 -
21708503-21708544,21708689-21708898,21709000-21709112,
21709232-21709349,21709386-21709412,21709671-21709808,
21710069-21710194,21710279-21710467,21710598-21710885,
21710937-21711024,21711120-21711298
Length = 505
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 14 ITSFPTIKLYSKDNQVHDYNGERTLAGLTKFV-ETDGEGAEPGPSVTEFEEEEDVPARD 187
+ +PTI YS + Y+G RT + F+ E G A +V E + + V D
Sbjct: 435 VEGYPTIYFYSSSGNLLSYDGARTAEEIISFINENRGPKAGAAAAVDEKTQIDAVEEED 493
>01_03_0161 +
13337265-13337297,13337880-13338017,13338211-13338308,
13338395-13338450,13338664-13338781,13338889-13338916,
13339021-13339112,13339321-13339477,13339569-13339693,
13339785-13339884,13339991-13340059
Length = 337
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 14 ITSFPTIKLYSKDN-QVHDYNGERTLAGLTKFVETDG 121
++ +PTI+ + K + + Y G+R+ L +FV T+G
Sbjct: 72 VSGYPTIQWFPKGSLEPKKYEGQRSAEALAEFVNTEG 108
>09_01_0007 + 212984-213949
Length = 321
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 107 VETDGEGAEPGPSVTEFEEEEDVPAR 184
V G+ PGP V +EEE+ PAR
Sbjct: 169 VSLSSNGSAPGPIVLSSDEEEEEPAR 194
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 530 WHILWVVSYIRTWIIYVGTFRTTSDPERERVRESSHET 643
W+ LW+V+ R W +Y R S P R + + ET
Sbjct: 542 WYFLWLVALNRCWTVYRLRSRGISHPARCLLCDQYDET 579
>06_01_0084 + 675185-677389
Length = 734
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 597 VVRNVPT*IIQVRM*LTTHRICHRFLKLSSTVS*NKIRIRNIER 466
++R P IQ++ L CH KL S V+ +I +R+I+R
Sbjct: 676 LIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQR 719
>11_06_0223 - 21419128-21419397,21419493-21419747,21420243-21420414,
21420530-21420757,21420916-21421049,21421309-21421392,
21421554-21421760,21421871-21422203,21422343-21422449,
21422823-21422988,21423127-21423230,21423347-21423507,
21423595-21424495,21424642-21424732,21424837-21425127,
21425491-21425575,21425665-21425747,21427653-21427773,
21427785-21428260
Length = 1422
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -2
Query: 569 SKCVCN*QPIEYAIVFSNFRPPCHKIRFAFEILNGSGFGT*IFVKLTK 426
S+C+ N +Y + N PP + +R+ +LNG FGT + K TK
Sbjct: 1146 SQCIANFWK-QYRSYWKN--PPYNAMRYLMTLLNGLVFGTVFWQKGTK 1190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,023,604
Number of Sequences: 37544
Number of extensions: 308712
Number of successful extensions: 731
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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