Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0815
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 49   4e-06
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)                 33   0.28 
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)           30   1.5  
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)                 30   1.5  
SB_37572| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)             28   5.9  
SB_25332| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
 Frame = +2

Query: 2   EHTKITSFPTIKLYSKDNQVHDYNGERTLAGLTKFVETDGE-GAEP---GPSVTEFEEEE 169
           E  K+ SFPTIK + K+ +  DYNG RTL    KF+E+ G+ G EP   G       E +
Sbjct: 450 EGVKVHSFPTIKYFPKEGEAVDYNGGRTLDDFVKFLESGGKAGNEPAAEGEEPPPEGEGD 509

Query: 170 DVPARD 187
           D+P  +
Sbjct: 510 DLPPEE 515


>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 362

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 14 ITSFPTIKLYSKD-NQVHDYNGERTLAGL 97
          I  FPTIK++  + N   DYNG+RT  G+
Sbjct: 13 IRGFPTIKIFGANKNSPQDYNGQRTAQGI 41


>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 2   EHTKITSFPTIKLYSKDNQVHDYNGERTLAGLTKFVET 115
           ++ KI  +P++KL+       DY G+RT A L  ++E+
Sbjct: 89  DNFKIEGYPSVKLFKFGKYAGDYIGQRTDAALVNYMES 126


>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
          Length = 186

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 8   TKITSFPTIKLYSKDNQVHDYNGERTLAGLTKFV 109
           +KI  +PT+ L+    Q  +Y+G R L  L +F+
Sbjct: 144 SKINGYPTLMLFKDGVQKKEYSGNRDLDSLYRFI 177


>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 1056

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 14  ITSFPTIKLYSKDNQVHDYNGERTLAGLTKFVETD-GEGAEPGPSVTEFEEEED 172
           ++ +PT+K++       DY+G R  +G+ ++++   G  +    SV   E++ D
Sbjct: 611 VSGYPTLKIFRNGEMSKDYDGPRDSSGIIRYMKKQAGPSSVEIKSVDHLEKKLD 664


>SB_37572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 314 NSTNSLANKMQIFVSIKSK*YNYTVLFYGSLIRGRRGQVFI 192
           NST      M + +S++   Y YTV FYG+L   R G V+I
Sbjct: 63  NSTEQKRLLMDLDISMRVSDYPYTVHFYGALF--REGDVWI 101


>SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)
          Length = 810

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 509 DESLRKRWHILWVVSYIRTWIIY-VGTFRTTSDPERERV 622
           D  L++ WH+ W     ++ ++  +G  +  SDP++ERV
Sbjct: 634 DSFLKQVWHMPWSTIRSKSVLVLDLGHLKIKSDPDQERV 672


>SB_25332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 14  ITSFPTIKLYSKDNQVHDYNGERTLAGLTKFV 109
           I  +PT+ L+    Q  +Y+G R L  L +F+
Sbjct: 1   INGYPTLMLFKDGVQKKEYSGNRDLDSLYRFI 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,450,915
Number of Sequences: 59808
Number of extensions: 341064
Number of successful extensions: 747
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)