Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0815
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47470.2 68415.m05924 thioredoxin family protein similar to p...    36   0.032
At2g47470.1 68415.m05925 thioredoxin family protein similar to p...    36   0.032
At1g77510.1 68414.m09026 protein disulfide isomerase, putative s...    33   0.17 
At1g07960.3 68414.m00867 thioredoxin family protein low similari...    29   2.1  
At1g07960.2 68414.m00866 thioredoxin family protein low similari...    29   2.1  
At1g07960.1 68414.m00865 thioredoxin family protein low similari...    29   2.1  
At1g21750.1 68414.m02722 protein disulfide isomerase, putative s...    28   6.4  
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD...    27   8.5  

>At2g47470.2 68415.m05924 thioredoxin family protein similar to
           protein disulfide isomerase [Dictyostelium discoideum]
           GI:2627440; contains Pfam profile: PF00085 Thioredoxin
          Length = 266

 Score = 35.5 bits (78), Expect = 0.032
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 14  ITSFPTIKLYSKDNQV-HDYNGERTLAGLTKFV 109
           ++ FPT+K + KDN+  HDY+G R L     F+
Sbjct: 213 VSGFPTLKFFPKDNKAGHDYDGGRDLDDFVSFI 245


>At2g47470.1 68415.m05925 thioredoxin family protein similar to
           protein disulfide isomerase [Dictyostelium discoideum]
           GI:2627440; contains Pfam profile: PF00085 Thioredoxin
          Length = 361

 Score = 35.5 bits (78), Expect = 0.032
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 14  ITSFPTIKLYSKDNQV-HDYNGERTLAGLTKFV 109
           ++ FPT+K + KDN+  HDY+G R L     F+
Sbjct: 213 VSGFPTLKFFPKDNKAGHDYDGGRDLDDFVSFI 245


>At1g77510.1 68414.m09026 protein disulfide isomerase, putative
           similar to protein disulfide isomerase precursor
           GB:P29828 GI:4704766 [Medicago sativa]; Pfam HMM hit:
           PF00085 Thioredoxins
          Length = 508

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = +2

Query: 14  ITSFPTIKLYSKDNQVHDYNGERTLAGLTKFVETDGE--GAEPGPSVTEFEE---EEDVP 178
           +  FPTI   S    V  Y G+RT      FVE + E      G   T+ EE    E+  
Sbjct: 444 VKGFPTIYFRSASGNVVVYEGDRTKEDFINFVEKNSEKKPTSHGEESTKSEEPKKTEETA 503

Query: 179 ARDEL 193
           A+DEL
Sbjct: 504 AKDEL 508


>At1g07960.3 68414.m00867 thioredoxin family protein low similarity
           to protein disulfide isomerase 4 [Giardia intestinalis]
           GI:13489047; contains Pfam profile PF00085: Thioredoxin
          Length = 146

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 11  KITSFPTIKLYSKDNQVHDYNGERTLAGLTKFVETDGEGA 130
           +I S+PT  L+    +V  Y G+R +  L  FV  + E A
Sbjct: 96  EIHSYPTFMLFYNGEEVSKYKGKRDVESLKAFVVEETEKA 135


>At1g07960.2 68414.m00866 thioredoxin family protein low similarity
           to protein disulfide isomerase 4 [Giardia intestinalis]
           GI:13489047; contains Pfam profile PF00085: Thioredoxin
          Length = 146

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 11  KITSFPTIKLYSKDNQVHDYNGERTLAGLTKFVETDGEGA 130
           +I S+PT  L+    +V  Y G+R +  L  FV  + E A
Sbjct: 96  EIHSYPTFMLFYNGEEVSKYKGKRDVESLKAFVVEETEKA 135


>At1g07960.1 68414.m00865 thioredoxin family protein low similarity
           to protein disulfide isomerase 4 [Giardia intestinalis]
           GI:13489047; contains Pfam profile PF00085: Thioredoxin
          Length = 146

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 11  KITSFPTIKLYSKDNQVHDYNGERTLAGLTKFVETDGEGA 130
           +I S+PT  L+    +V  Y G+R +  L  FV  + E A
Sbjct: 96  EIHSYPTFMLFYNGEEVSKYKGKRDVESLKAFVVEETEKA 135


>At1g21750.1 68414.m02722 protein disulfide isomerase, putative
           similar to SP|P29828 Protein disulfide isomerase
           precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform
           contains non-consensus GA donor splice site at intron 9
          Length = 501

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +2

Query: 14  ITSFPTIKLYSKDNQVHDYNGERTLAGLTKFVETDGEGAEPGPSVTEFEEEEDVPARDEL 193
           +  FPTI   S    V  Y G+RT      FV+ + +    G    E E  E+V  +DEL
Sbjct: 446 VKGFPTIYFKSASGNVVVYEGDRTKEDFISFVDKNKDTV--GEPKKEEETTEEV--KDEL 501


>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
           CDP-related similar to CCAAT displacement protein (CDP)
           (Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
           contains Pfam:PF00904 Involucrin repeat
          Length = 689

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 17  TSFPTIKLYSKDNQVHDYNGERTLA-GLTKFVE 112
           T    +KLY K   V DYN ++ ++ G  K+VE
Sbjct: 549 TKADNVKLYGKIRYVQDYNHDKVVSRGSKKYVE 581


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,870,180
Number of Sequences: 28952
Number of extensions: 248808
Number of successful extensions: 631
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)