Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0814
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   5.9  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   5.9  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    25   7.8  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 521 NIPYKFWDSVEPYCAPVTLDDIKFFRVLISSKAVTPHLP 637
           + P  F  S      P+TL D   F  L +S   TPH P
Sbjct: 97  SFPSVFGTSNNHQIVPLTLKDGNDFGALYASLNTTPHFP 135


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 328 GYCSCLPAALPFFSLLDSFESMLSIQI 248
           G+CS L A   FF LLD    M S+ I
Sbjct: 334 GHCSALKADQMFFQLLDGVAYMHSLGI 360


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 552 STESQNLYGILFLGRL-IVKVQVLQSCLNSLNH*SRYEILRKRLR 421
           S  S N    L LGR  IVK+  L++C+NS    ++ + L   LR
Sbjct: 188 SLVSSNTASKLHLGRKDIVKLSELRNCINSSKDSNQIQELENLLR 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,830
Number of Sequences: 5004
Number of extensions: 49900
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)