Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0814
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0505 - 4379722-4380795,4380868-4381008,4381099-4381270,438...    28   8.1  
04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062...    28   8.1  

>08_01_0505 - 4379722-4380795,4380868-4381008,4381099-4381270,
            4381944-4382047,4382127-4382259,4384477-4384653,
            4385164-4385309,4385536-4385625,4385703-4385915,
            4386090-4386182,4386743-4386937,4387018-4387110,
            4387924-4388019,4388556-4388985,4389424-4390091,
            4392074-4392271,4392690-4393407,4394036-4394181
          Length = 1628

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 387  SNQPKVPKFKNFSNASSGSHTYSNDLVNSDNSVKLELSQLACLKIISH 530
            S+QP   +F N  ++   SH +SN  + S  +   E S +   ++ SH
Sbjct: 1355 SSQPTSHEFLNMPSSQPSSHEFSN--IKSSQTTSHEFSNVQTSQLASH 1400


>04_04_0294 +
           24204563-24204748,24205531-24205620,24205980-24206211,
           24207180-24207457,24207576-24207647,24208054-24208295,
           24208781-24209197,24209296-24209497,24209624-24209738,
           24209821-24209906,24210235-24210354,24210431-24210519,
           24210588-24210669,24211072-24211263,24211546-24211668
          Length = 841

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 515 KNNIPYKFWDSVEPYCAPVTLDDIKF 592
           ++N   KFW    PYC    ++ IKF
Sbjct: 66  RSNAVKKFWQQFHPYCNSSAVERIKF 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,659,322
Number of Sequences: 37544
Number of extensions: 290929
Number of successful extensions: 680
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)