Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0814
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16304| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_18455| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_19261| Best HMM Match : Keratin_B2 (HMM E-Value=3)                  28   6.3  

>SB_16304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1489

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +2

Query: 515 KNNIPYKFWDSVEPYCAPVTLDDIKF 592
           K + P +FW  VEPYCA +T DD+KF
Sbjct: 159 KTDAPNRFWSVVEPYCADLTQDDLKF 184


>SB_18455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 402 VPKFKNFSNASSGSHTYSNDLVNSDNSVKLELSQLACLKIISHINFGIQ 548
           +PK   F    S  H + N L N D   +LE+ ++   K+ ++I+  ++
Sbjct: 33  IPKDLLFRVVCSCDHFFKNKLTNEDTQQELEVLEIEISKLATYIHVDVK 81


>SB_19261| Best HMM Match : Keratin_B2 (HMM E-Value=3)
          Length = 333

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 334 KENFKMTKWLKLKTTQNYPISQKCLNLKISQT 429
           K      KWL+ +  QN PI Q+  NL++  T
Sbjct: 54  KRRMDRMKWLQQRRDQNLPIWQRVGNLRVQAT 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,392,866
Number of Sequences: 59808
Number of extensions: 343081
Number of successful extensions: 840
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)