Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0814
         (696 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY142214-1|AAN52142.1|  556|Drosophila melanogaster transcriptio...    49   7e-06
AJ276130-1|CAB89084.1|  556|Drosophila melanogaster Diskette pro...    49   7e-06
AE014298-2658|AAF48794.1|  556|Drosophila melanogaster CG7098-PA...    49   7e-06
AE013599-264|AAS64793.1|  451|Drosophila melanogaster CG33349-PA...    29   4.6  

>AY142214-1|AAN52142.1|  556|Drosophila melanogaster transcriptional
           adapter 3 protein.
          Length = 556

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 22/50 (44%), Positives = 33/50 (66%)
 Frame = +2

Query: 503 ISLPKNNIPYKFWDSVEPYCAPVTLDDIKFFRVLISSKAVTPHLPPDPSL 652
           +++PKN+ P KFW SVEPYC P+T +D++    L+  +   P +PP P L
Sbjct: 254 MTVPKNDTPNKFWLSVEPYCMPLTNEDLRLIDDLL-EQYWGPLVPPVPPL 302



 Score = 29.9 bits (64), Expect = 3.5
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +1

Query: 85  IPYIKIQDNAVLLPRFTAVAARSADEPIGMDXXXXXXXXXXXXXCNTALRCRYFQSE 255
           IP I+ +D   LLP   A   R AD+ +  +              N ALR R  ++E
Sbjct: 64  IPIIRTRDVPKLLPTIAAALQRPADDHLAAEDLDAVQLELEQMLSNVALRTRVLKAE 120


>AJ276130-1|CAB89084.1|  556|Drosophila melanogaster Diskette
           protein.
          Length = 556

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 22/50 (44%), Positives = 33/50 (66%)
 Frame = +2

Query: 503 ISLPKNNIPYKFWDSVEPYCAPVTLDDIKFFRVLISSKAVTPHLPPDPSL 652
           +++PKN+ P KFW SVEPYC P+T +D++    L+  +   P +PP P L
Sbjct: 254 MTVPKNDTPNKFWLSVEPYCMPLTNEDLRLIDDLL-EQYWGPLVPPVPPL 302



 Score = 29.9 bits (64), Expect = 3.5
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +1

Query: 85  IPYIKIQDNAVLLPRFTAVAARSADEPIGMDXXXXXXXXXXXXXCNTALRCRYFQSE 255
           IP I+ +D   LLP   A   R AD+ +  +              N ALR R  ++E
Sbjct: 64  IPIIRTRDVPKLLPTIAAALQRPADDHLAAEDLDAVQLELEQMLSNVALRTRVLKAE 120


>AE014298-2658|AAF48794.1|  556|Drosophila melanogaster CG7098-PA
           protein.
          Length = 556

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 22/50 (44%), Positives = 33/50 (66%)
 Frame = +2

Query: 503 ISLPKNNIPYKFWDSVEPYCAPVTLDDIKFFRVLISSKAVTPHLPPDPSL 652
           +++PKN+ P KFW SVEPYC P+T +D++    L+  +   P +PP P L
Sbjct: 254 MTVPKNDTPNKFWLSVEPYCMPLTNEDLRLIDDLL-EQYWGPLVPPVPPL 302



 Score = 29.9 bits (64), Expect = 3.5
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +1

Query: 85  IPYIKIQDNAVLLPRFTAVAARSADEPIGMDXXXXXXXXXXXXXCNTALRCRYFQSE 255
           IP I+ +D   LLP   A   R AD+ +  +              N ALR R  ++E
Sbjct: 64  IPIIRTRDVPKLLPTIAAALQRPADDHLAAEDLDAVQLELEQMLSNVALRTRVLKAE 120


>AE013599-264|AAS64793.1|  451|Drosophila melanogaster CG33349-PA
           protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 518 NNIPYKFWDSVEPYCAPVTLDDIKFFRVLIS--SKAVTPHLPPD 643
           N + Y   +++EP+    TLD++ +  +L++   K +   +PP+
Sbjct: 129 NGLRYSTLETLEPFENDTTLDNVNYLNILLTLQKKVIAVKIPPE 172


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,098,632
Number of Sequences: 53049
Number of extensions: 504937
Number of successful extensions: 1166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)