Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0814
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    28   6.8  
At1g16680.1 68414.m01997 DNAJ heat shock N-terminal domain-conta...    28   6.8  

>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 417  NFSNASSGSHTYSNDLVNSDNSVKLELSQLA 509
            N  N SS    +  DLV+S+  + +ELS LA
Sbjct: 3935 NERNRSSEEDDFETDLVHSEKDISVELSTLA 3965


>At1g16680.1 68414.m01997 DNAJ heat shock N-terminal
           domain-containing protein / S-locus protein, putative
           similar to S-locus protein 5 GI:6069485 from [Brassica
           rapa]; contains Pfam profile PF00226 DnaJ domain
          Length = 496

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/38 (28%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = -2

Query: 116 TALSCIL--MYGIGHVSTLILAVETEPGIFVGLVYGVI 9
           T++SC++  + G+G    ++L +   PGIF+  ++G++
Sbjct: 78  TSVSCLVYVLLGMGAAGAVVLYLGRTPGIFIVGLFGIL 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,778,467
Number of Sequences: 28952
Number of extensions: 248186
Number of successful extensions: 587
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)