Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0813
         (485 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    25   0.36 
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    22   2.6  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    22   2.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   4.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   5.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   5.9  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    21   7.9  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 154 EVSAGWSHSASSLICSTSYGTHT-LSHWARAALTPASGFYIY 276
           E SA +S  ++      + GT   +S W  A L P +G+Y Y
Sbjct: 28  ESSAFYSPLSNPYALKDAGGTAADMSAWTSAGLQPTTGYYPY 69


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -3

Query: 297 LVCPT-PNVYIKTGGGSESGP 238
           L  PT  ++Y  T GGSE+GP
Sbjct: 271 LADPTNTSLYAATYGGSEAGP 291


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -3

Query: 297 LVCPT-PNVYIKTGGGSESGP 238
           L  PT  ++Y  T GGSE+GP
Sbjct: 271 LADPTNTSLYAATYGGSEAGP 291


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 174  AFSIQPHLLYLVWYPHSVTLGEGRSHSRL 260
            A ++  +L Y  W   + T+GEG+   ++
Sbjct: 1269 AKNLDSNLKYEFWVTAATTIGEGQPSKKV 1297


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -2

Query: 169 NQPKLQSWS*VDRASAPKGGRAALPAAPEIIQNQTRWGERRSPLSVNNA 23
           +QP  + +S  D+      GR A   +PE  +   R  E   P + N A
Sbjct: 277 HQPSSEVYSMFDKLLLMSEGRTAFLGSPEEAETFFRELEAPCPRNYNPA 325


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -2

Query: 169 NQPKLQSWS*VDRASAPKGGRAALPAAPEIIQNQTRWGERRSPLSVNNA 23
           +QP  + +S  D+      GR A   +PE  +   R  E   P + N A
Sbjct: 277 HQPSSEVYSMFDKLLLMSEGRTAFLGSPEEAETFFRELEAPCPRNYNPA 325


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -3

Query: 297 LVCPT-PNVYIKTGGGSESGP 238
           L  PT  ++Y  T GGS++GP
Sbjct: 270 LADPTNTSLYAGTYGGSDAGP 290


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,256
Number of Sequences: 336
Number of extensions: 2824
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)