Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0813
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   2.0  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   6.1  
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.0  

>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 133 RASAPKGGRAALPAAPEIIQNQTRWGERRSPLSVNNAI 20
           R  A + GR AL  +  + +N TR+    +P+SV ++I
Sbjct: 104 RRPAGRRGRPALNTSNSLERNGTRYVSAEAPISVKSSI 141


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 242 PLSLPPPVFIYTLGVGQTRPCGKLDALIQFWVIFG 346
           P+ LPPP     L +G        DAL +F+ + G
Sbjct: 61  PILLPPPNITGKLHIGHALTITIQDALARFYAMHG 95


>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 380 KTLVFNSHYMIIQKLPKTESEHPTFH 303
           K++VF + Y  I K PK   E   FH
Sbjct: 26  KSIVFRTQYESIFKNPKHHGEKKPFH 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,110
Number of Sequences: 5004
Number of extensions: 45381
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)