Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0813
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0532 + 18386593-18386722,18386826-18386900,18387098-183875... 30 1.1
12_02_0167 - 14824241-14824279,14824385-14824423,14824509-148247... 28 3.5
02_05_0977 - 33239887-33240566,33241010-33241985 28 4.6
02_05_0948 - 33003921-33006269 28 4.6
09_03_0061 - 11967727-11967765,11967872-11967910,11967996-119682... 27 6.0
03_03_0134 + 14732622-14732830,14733202-14733316,14733429-147336... 27 6.0
02_05_0346 - 28152617-28152758,28152835-28153001 27 6.0
01_06_0046 + 25943183-25943590 27 6.0
05_05_0286 - 23863234-23863777,23863933-23864107,23864184-238643... 27 8.0
05_03_0413 + 13639476-13639537,13639702-13639783,13639865-136399... 27 8.0
>09_04_0532 +
18386593-18386722,18386826-18386900,18387098-18387510,
18387682-18387688,18387944-18388005,18388046-18388341,
18388456-18388813,18388916-18389491,18389956-18390231
Length = 730
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 196 CSTSYGTHT--LSHWARAALTPASGFYIYIRSRADKTMWKVGCSDSVLGNFW 345
C +YG + LS W R +T ++ + R ++ +WK+G + L FW
Sbjct: 610 CGWAYGMNVFDLSEWRRQKITDV--YHNWQRLNENRILWKLGTLPAGLVTFW 659
>12_02_0167 -
14824241-14824279,14824385-14824423,14824509-14824797,
14824898-14824991,14825129-14825639,14825751-14826014,
14826103-14826549,14826628-14826801,14827003-14827323
Length = 725
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 217 HTLSHWARAALTPASGFYIYIRSRADKTMW 306
+ ++HW +TP Y Y+ SR DK +
Sbjct: 602 YIIAHWILLVITPKWSTYHYLNSRIDKNAY 631
>02_05_0977 - 33239887-33240566,33241010-33241985
Length = 551
Score = 27.9 bits (59), Expect = 4.6
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 82 SPALREEQPFRLWVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAALT 252
SPA F WV KH + + SS S + + +++ GTHT A AA+T
Sbjct: 198 SPAPPSRAAFPSWVTKHDRHLLSSPAS---TIAPDAVVALDGSGTHTSISDAIAAVT 251
>02_05_0948 - 33003921-33006269
Length = 782
Score = 27.9 bits (59), Expect = 4.6
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Frame = +1
Query: 172 SHSASSLICSTSYGTHTLSHWARAALTPASGFYIYIRSRAD-----------KTMWKVGC 318
+ + S + + +GTHT S A + +T A GF+ Y R +A K WK GC
Sbjct: 213 TEESKSPLDTEGHGTHTASTAAGSPVTGA-GFFDYARGQAVGMSPAAHIAAYKICWKSGC 271
Query: 319 SDS 327
DS
Sbjct: 272 YDS 274
>09_03_0061 -
11967727-11967765,11967872-11967910,11967996-11968284,
11968367-11968515,11968693-11969469
Length = 430
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +1
Query: 169 WSHSASSLICSTSYGTHTLSHWARAALTPASGFYIYIRSRADKTMW 306
WSH I Y + +HW +TP Y+ SR DK +
Sbjct: 294 WSHRDKEYIM---YAYNQYAHWIILVITPKWSTCHYLNSRIDKNAY 336
>03_03_0134 +
14732622-14732830,14733202-14733316,14733429-14733632,
14733862-14733990,14734077-14734244,14734920-14735177,
14736051-14736096,14736574-14736601,14737206-14737295,
14738132-14738204,14738291-14738319,14738425-14738548,
14738741-14738851,14739082-14739182,14739263-14739365
Length = 595
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 115 LWVLKHGQLMTSSEVSAGWSHSASSLI 195
LW+L+H LM SS++ W SA I
Sbjct: 304 LWLLRHSSLMGSSDID-NWVQSAKESI 329
>02_05_0346 - 28152617-28152758,28152835-28153001
Length = 102
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 130 HGQLMTSSEVSAGWSHSAS--SLICSTSYGTHTLSHWARAALTP 255
+G SS VS W A+ +L CS S HW+ A L P
Sbjct: 27 YGTRRLSSSVSISWRIQATRQALQCSRSLMLKLADHWSPAKLQP 70
>01_06_0046 + 25943183-25943590
Length = 135
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 309 FPHGLVCPTPNVYIKTGGGSESGPRPV 229
+P P P Y++ GGG++SG P+
Sbjct: 72 YPGSYCPPPPAAYVQFGGGAQSGRGPL 98
>05_05_0286 -
23863234-23863777,23863933-23864107,23864184-23864377,
23865315-23865322
Length = 306
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 169 WSHSASSLICSTSYGTHTLSHWARAAL--TPASG 264
+S SA ++ STS H SH+A A+L PA G
Sbjct: 266 YSCSAPNITASTSASPHEFSHFAPASLFTNPAEG 299
>05_03_0413 +
13639476-13639537,13639702-13639783,13639865-13639940,
13640016-13640101,13640294-13640370,13641138-13641194,
13641294-13641378,13642331-13642417,13642603-13642683,
13643748-13643885,13643962-13644147,13644242-13644268
Length = 347
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 321 RASNFPHGLVCPTPNVYIKTGGGSESGPRP 232
+A +F HGL N ++K GG E G P
Sbjct: 262 KAEHFAHGLCEKCYNKFMKLSGGLEGGSDP 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,815,749
Number of Sequences: 37544
Number of extensions: 323534
Number of successful extensions: 1009
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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