Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0813
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          31   0.67 
SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.5  
SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44)             29   2.7  
SB_37839| Best HMM Match : HA2 (HMM E-Value=4e-21)                     29   2.7  
SB_15717| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_43872| Best HMM Match : DUF229 (HMM E-Value=0)                      28   3.6  
SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)                28   3.6  
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)                       27   8.2  

>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -3

Query: 399 IKYSITKNSRV*FSLHDYPKITQN*IRASNFPHGLVCPTPNVYIKTGGGSES 244
           + Y I    +  F   D+P I+Q  +      +G    T  +Y+KTG G+ S
Sbjct: 655 VSYPIQTGQKARFMSEDFPPISQRCVNFWFHMYGTTVGTLTLYLKTGRGNSS 706


>SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 85  PALREEQPFRLWVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSH 231
           PA+  +QP+          +  S+ +  W+ S ++ IC+  YG H + H
Sbjct: 48  PAVYSQQPYYGPPTTQQTFVQVSKAAILWTTSNTTNICTGQYGNHNMDH 96


>SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44)
          Length = 906

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 175 HSASSLICSTSYGTHTLSHWARAALTPASGFYIY 276
           H   +L+C  +Y T T+ +WA   +      YIY
Sbjct: 441 HVIYALVCGFAYVTFTVIYWAAGGVNHEGNSYIY 474


>SB_37839| Best HMM Match : HA2 (HMM E-Value=4e-21)
          Length = 422

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +1

Query: 118 WVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAALTPASGFYIYIR 282
           W L + Q  +    + G SH A   + +    TH  + W R    P S  + Y+R
Sbjct: 351 WKLPYSQTTSYQPTTHGHSHIARQPVINKLTPTH--NPWTRPYTVPLSNMWTYVR 403


>SB_15717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +1

Query: 118 WVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAALTPASGFYIYIR 282
           W L + Q  +    + G SH A   + +    TH  + W R    P S  + Y+R
Sbjct: 80  WKLPYSQTTSYQPTTHGHSHIARQPVINKLTPTH--NPWTRPYTVPLSNMWTYVR 132


>SB_43872| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 806

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +1

Query: 103 QPFRLWVLKHGQL-MTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAALTPASGFYIYI 279
           Q F+ W L    + +T  + +  WSH   S    + +    L+   RAA   A  F +  
Sbjct: 623 QAFKEWTLCFEAMEITLEDQNKAWSHEQESNYLDSVHEQVQLTTTGRAARQKARSFEMAS 682

Query: 280 RSRADK 297
             RADK
Sbjct: 683 AKRADK 688


>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 345 PKITQN*IRASNFPHGLVCPTPNVYIKTGGG 253
           PK T+  +RA   PH  V   P V   TGGG
Sbjct: 258 PKTTRKPVRAMETPHAEVLIQPKVTGATGGG 288


>SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)
          Length = 639

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -3

Query: 282 PNVYIKTGGGSESGPRPV*QSVGTIRGRADEAGC*MRPTSRNFRAGHELTVLQHPK 115
           P+V+ + G      PRP    +  +     E GC + P  R  R G  LT+ Q+ K
Sbjct: 176 PDVWPEPGMDWLVRPRPGGWPLPELIQEIVELGCHLAPVGRGKRTGKTLTIFQYKK 231


>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 185  PASSALPRMVPTLCHTGRGPLSL 253
            PASSA P   P++ H G  P+ L
Sbjct: 1712 PASSATPESAPSVYHAGADPVIL 1734


>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 382

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 191 SSALPRMVPTLCHTGRGPLSLPPP 262
           S++LP M+P +   G  P+  PPP
Sbjct: 220 STSLPPMIPPVGMLGHPPMGAPPP 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,343,657
Number of Sequences: 59808
Number of extensions: 335054
Number of successful extensions: 917
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)