Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0813
         (485 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL078638-8|CAI41062.1|  323|Homo sapiens four and a half LIM dom...    30   3.8  
AF063002-1|AAC72886.1|  323|Homo sapiens LIM protein SLIMMER pro...    30   3.8  
BC070494-1|AAH70494.1|  232|Homo sapiens FTH1 protein protein.         30   5.0  
AL117478-1|CAB55951.1|  698|Homo sapiens hypothetical protein pr...    30   5.0  
AK127093-1|BAC86824.1|  315|Homo sapiens protein ( Homo sapiens ...    29   6.6  
BC041379-1|AAH41379.1|  240|Homo sapiens transmembrane protein 6...    29   8.7  

>AL078638-8|CAI41062.1|  323|Homo sapiens four and a half LIM
           domains 1 protein.
          Length = 323

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +2

Query: 161 RLVGRIQHPASSALPRMVPTLCHTGRGPLSLPPPVFIYTLGVGQTRPC 304
           R V R+ HP S A     P +CH  R PL+L P   +     G  R C
Sbjct: 232 RTVSRVSHPVSKARK---PPVCHGKRLPLTLFPSANLRGRHPGGERTC 276


>AF063002-1|AAC72886.1|  323|Homo sapiens LIM protein SLIMMER
           protein.
          Length = 323

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +2

Query: 161 RLVGRIQHPASSALPRMVPTLCHTGRGPLSLPPPVFIYTLGVGQTRPC 304
           R V R+ HP S A     P +CH  R PL+L P   +     G  R C
Sbjct: 232 RTVSRVSHPVSKARK---PPVCHGKRLPLTLFPSANLRGRHPGGERTC 276


>BC070494-1|AAH70494.1|  232|Homo sapiens FTH1 protein protein.
          Length = 232

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 185 PASSALPRMVPTLCHTGRGPLSLPPPVFIYTLGVGQ 292
           PAS+ L R    + H GR P++ PP     TLG+ Q
Sbjct: 4   PASTVLGRNPALVPHPGRPPIASPPSPLHRTLGLPQ 39


>AL117478-1|CAB55951.1|  698|Homo sapiens hypothetical protein
           protein.
          Length = 698

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +2

Query: 173 RIQHPASSALPRM-VPTLCHTGRGPLSLPPPVFIYTLGVGQTRPCGKLDALIQFW 334
           R+ HP   ALP +  P  C T   P   P       LG  +T PC     L+  W
Sbjct: 456 RLPHPLPQALPVLPCPAKCETLLSPPPSPKVSLSRLLGPPRTGPCSVPPELVLGW 510


>AK127093-1|BAC86824.1|  315|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45150 fis, clone BRAWH3042438, highly  similar
           to Diacylglycerol kinase, alpha (EC 2.7.1.107). ).
          Length = 315

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 97  PAAPEIIQNQTRWGERRSPLSVNNAILTK 11
           P +  +++N+  WGER SPL +N  +  K
Sbjct: 114 PNSSRVLRNRRGWGERLSPLGLNLKVSPK 142


>BC041379-1|AAH41379.1|  240|Homo sapiens transmembrane protein 65
           protein.
          Length = 240

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 185 PASSALPRMVPTLCHTGRGPLSLPPP 262
           PA++A PR  P+ C  GRG L+L PP
Sbjct: 20  PAAAAAPRP-PSWCCCGRGLLALAPP 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,874,899
Number of Sequences: 237096
Number of extensions: 1809754
Number of successful extensions: 4288
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4288
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)