Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0813
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41010-5|AAV28334.1|  975|Caenorhabditis elegans Hypothetical pr...    30   1.0  
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AC024788-3|AAF60614.2|   98|Caenorhabditis elegans Caenacin (cae...    29   2.4  
Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z99281-14|CAB16524.1|  532|Caenorhabditis elegans Hypothetical p...    27   5.5  
U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine rece...    27   5.5  
U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging ...    27   5.5  
Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut...    27   7.2  
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion...    27   7.2  
Z80344-3|CAB02488.2|  491|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U41010-5|AAV28334.1|  975|Caenorhabditis elegans Hypothetical protein
            T05A12.4b protein.
          Length = 975

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 266  KPEAGVRAALAQCDRVWVPYEVEQMRLDAECDQPAETSELVMS*PCFSTQ 117
            K E   R    + + +  P + ++ RLD E +   ET+E   + PC STQ
Sbjct: 854  KSERNGRVNEREIEEITRPKDAKRSRLDVEEEDEMETNEEKSNTPCSSTQ 903


>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
            T05A12.4a protein.
          Length = 1622

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 266  KPEAGVRAALAQCDRVWVPYEVEQMRLDAECDQPAETSELVMS*PCFSTQ 117
            K E   R    + + +  P + ++ RLD E +   ET+E   + PC STQ
Sbjct: 854  KSERNGRVNEREIEEITRPKDAKRSRLDVEEEDEMETNEEKSNTPCSSTQ 903


>AC024788-3|AAF60614.2|   98|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 6 protein.
          Length = 98

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -1

Query: 302 MVLSALLLMYI*KPEAGVRAALAQCDRVWVPYEVEQMRLDAECDQPAETSE 150
           ++L  +L      P+A  R  LAQ ++V  PY+VE   LD   D P + S+
Sbjct: 8   ILLFCILATVFSAPKAPERGQLAQAEQVQGPYDVE---LDGADDAPHDRSK 55


>Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical
           protein F53C11.2 protein.
          Length = 693

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 115 LWVLKHGQLMTSSEVSAGWSHSASSLICSTSYG 213
           LWV   G L+TS+    GWS   S +I +  YG
Sbjct: 551 LWVFTKG-LLTSNFSKVGWSFFVSWVIIANHYG 582


>Z99281-14|CAB16524.1|  532|Caenorhabditis elegans Hypothetical
           protein Y57G11C.23 protein.
          Length = 532

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +1

Query: 79  LSPALREEQPFRLWVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAAL 249
           LS AL +   F ++    G  +  + ++ GW++++  +I S  +   T  +WA A +
Sbjct: 150 LSAALNDVMSFYIFRFLVGFAIAGT-LTVGWTYASEMVIPSRRFRLRTFPNWANARM 205


>U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein3 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 404 MGLNIALQKTLVFNSHYMIIQKLPKTESEHPTFHMVLSALLL 279
           +GLN  +QK L+  S Y ++Q    T  + PT +  L+++ +
Sbjct: 278 IGLNNEVQKNLLPKSIYPLLQHFGLTRFDAPTINATLASVTI 319


>U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging
           adult overexpressionprotein 3 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 344 QKLPKTESEHPTFHMVLS 291
           QK+ KT   HP FH VL+
Sbjct: 21  QKIAKTREHHPNFHAVLA 38


>Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical
           protein F23H12.6 protein.
          Length = 1025

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = +1

Query: 94  REEQPFRL---WVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAALTP--- 255
           R ++  RL   W++ HG L +  +      HS+ SL  +++  T T    +R+   P   
Sbjct: 464 RRDEELRLDDQWIVPHGMLQSIIKGRKESHHSSRSLQSNSTTTTGTTGISSRSVFFPETE 523

Query: 256 ASGFYIYI 279
             G+++Y+
Sbjct: 524 TQGYFVYM 531


>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
           glutamate receptor protein1 protein.
          Length = 1025

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 245 LSLPPPVFIYTLGVGQTRPCGKLDALIQFWVIF 343
           +++  P F+YT  +G    C +L   +  W IF
Sbjct: 400 VTVADPPFVYTTPIGSPSQCAELGNTVVEWSIF 432


>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
           ionotropic glutamatereceptor NMR-1 protein.
          Length = 1025

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 245 LSLPPPVFIYTLGVGQTRPCGKLDALIQFWVIF 343
           +++  P F+YT  +G    C +L   +  W IF
Sbjct: 400 VTVADPPFVYTTPIGSPSQCAELGNTVVEWSIF 432


>Z80344-3|CAB02488.2|  491|Caenorhabditis elegans Hypothetical
           protein F15D4.5 protein.
          Length = 491

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -1

Query: 209 YEVEQMRLDAECDQPAETSELVMS*PCFSTQRRKGCSSRSAGDNSEPNKMGRK 51
           YE+  + ++ E DQPAE SE +   P     +    S  S  DNS P K+  K
Sbjct: 96  YEMATISIEKETDQPAEISEPLQK-PAELFPKPPPMSIHS--DNSSPLKVDDK 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,124,089
Number of Sequences: 27780
Number of extensions: 256493
Number of successful extensions: 651
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)