Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0813
         (485 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12290.1 68418.m01445 expressed protein similarity to NCA2 pr...    30   0.95 
At2g37000.1 68415.m04538 TCP family transcription factor, putati...    27   5.1  
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t...    27   6.7  
At3g51040.2 68416.m05589 expressed protein contains Pfam PF05608...    27   6.7  
At3g51040.1 68416.m05588 expressed protein contains Pfam PF05608...    27   6.7  

>At5g12290.1 68418.m01445 expressed protein similarity to NCA2
           protein, yeast, PIR:S54389~Contains 'Homeobox' domain
           signature and profile AA305-328
          Length = 602

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 109 FRLWVLKHGQLMTSSEVSAGWSHSASSLICS 201
           F +W+L+H  LM SS++   W H A     S
Sbjct: 315 FSIWLLRHSSLMGSSDIE-NWVHDAKEATMS 344


>At2g37000.1 68415.m04538 TCP family transcription factor, putative
           similar to TFPD  (GI:6681577) [Arabidopsis thaliana]
          Length = 188

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 85  PALREEQPFRLWVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAALTPAS 261
           PAL   + F+L   + G       +    S +  S+I +T YGT  +S+W   A   +S
Sbjct: 60  PALAAARIFQL-TRELGHKTEGETIEWLLSQAEPSIIAATGYGTKLISNWVDVAADDSS 117


>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 428

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 179 QHPASSALPRMVPTLCHTGRGPLSLPPPVFI 271
           +HPA    P  V    HT + P   PPP +I
Sbjct: 43  KHPAKPPKPPTVKPPTHTPKPPTVKPPPPYI 73


>At3g51040.2 68416.m05589 expressed protein contains Pfam PF05608:
           Protein of unknown function (DUF778)
          Length = 231

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +2

Query: 248 SLPPPVFIYTLGV---GQT--RPCGKLDALIQFWVIFG*SC 355
           SL PP+ +YT+G+   G T    C  L  L+  W I G  C
Sbjct: 184 SLLPPLIVYTIGILLGGWTFIASCSILVVLLTGWFIIGTYC 224


>At3g51040.1 68416.m05588 expressed protein contains Pfam PF05608:
           Protein of unknown function (DUF778)
          Length = 231

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +2

Query: 248 SLPPPVFIYTLGV---GQT--RPCGKLDALIQFWVIFG*SC 355
           SL PP+ +YT+G+   G T    C  L  L+  W I G  C
Sbjct: 184 SLLPPLIVYTIGILLGGWTFIASCSILVVLLTGWFIIGTYC 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,625,702
Number of Sequences: 28952
Number of extensions: 245216
Number of successful extensions: 650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)