Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0812
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 30 0.36
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 27 1.9
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.9
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.6
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 26 4.5
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 26 5.9
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 7.9
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 25 7.9
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 7.9
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 7.9
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 29.9 bits (64), Expect = 0.36
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 559 WRIFAPGYHIFLPLLLRQSTFASHACLS 476
WRI +PGY L ++L SHA +S
Sbjct: 363 WRIGSPGYRFLLKIVLADEENISHAAIS 390
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -2
Query: 199 FQTIAFI-TFSLIFFMIATVVINKLNLISFFIFCFTLDNFSIMTLTKFGRFVFIAFCVF* 23
FQT F + IFF + + ++KLN + L F + ++ G F I F F
Sbjct: 135 FQTHTFTNSIETIFFFLTILFLSKLNSVPLNKKISYLYTFLLAIVSVLGFFTRITFLAFV 194
Query: 22 ISSFGMF 2
I+ + F
Sbjct: 195 IAPYIYF 201
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 687 PPLTLIHTIEIYGWA 643
PPL L +T+ IYGWA
Sbjct: 301 PPLILAYTVCIYGWA 315
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 238 TFIIFILWAFLVWFQTIAFITFSLIFFMIATVVINKLNLISFFI 107
+F+ F+ F+V+F + + F FF+ V ++ L +S +
Sbjct: 134 SFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLL 177
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 268 NDLDFLATLQLRSSEEDEKQKALRREMKEK 357
NDLD L+L E ++KQ+ R+EM+EK
Sbjct: 868 NDLDHAEPLKL---ELEQKQRERRKEMEEK 894
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 98 KTKDEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPKDENDKCSDNHK 253
K K EK +++LI++ HKENE + K +++ +K + + + K
Sbjct: 144 KEKKEKE-RIRLIEE--QKHKENEQRRLKQEQIDAKRKEEEAREKRMKETFK 192
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 131 LIDDYGSDHKENETKSNKSDRLKPYKKSPK 220
L+++YGS K E + L+P+ P+
Sbjct: 77 LVEEYGSKGKHEELRETYEQMLRPFPYVPR 106
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 116 RNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSP 217
R ++K I + SDHK K N+ L+ Y+K P
Sbjct: 103 RFKIKNIKAWQSDHKRLPEKYNQMVCLEAYRKYP 136
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 494 SECRLS*EQGKKNMITGRKNSPKICKPSDSSDSDDG-TLKNISI-FWHSRW 640
SEC +S G RK+S IC +D + D+G TL+N + H W
Sbjct: 918 SECVMS-SDGLYIFGMRRKSSSGICPTADEKNEDNGFTLRNRKLRTGHYNW 967
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 62 FSKGHYAKIIEGKTKDEKRNQVKLIDD 142
F G Y K+I GK KD+ V++ D
Sbjct: 521 FRHGDYVKVIAGKYKDDTGMVVRISKD 547
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,721
Number of Sequences: 5004
Number of extensions: 45442
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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