Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0812
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573... 33 0.22
02_01_0101 + 745924-747343,748077-748174 33 0.22
03_01_0366 - 2848449-2849032,2849155-2849233,2849346-2849608,284... 30 1.5
08_02_1325 - 26146775-26147247,26147397-26148579 29 2.6
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 29 2.6
01_07_0105 - 41104655-41104851,41105818-41107150 29 2.6
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 29 3.5
03_01_0046 - 384444-384460,384649-384770,385144-385301,385379-38... 29 4.6
02_04_0012 - 18891917-18893091,18893209-18893323,18893425-188934... 28 6.1
02_04_0009 - 18865087-18866249,18866357-18866471,18866555-188666... 28 8.1
>03_06_0311 + 33054022-33054118,33056109-33056353,33057058-33057398,
33057488-33057538,33057623-33057695,33058229-33058333,
33060124-33060206,33061209-33061249,33061659-33063120,
33063368-33064847,33064958-33065122,33065232-33065424,
33065502-33065613,33065702-33065849,33065951-33066148,
33066234-33066512,33066612-33066773,33066872-33067090,
33067481-33067612
Length = 1861
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +2
Query: 74 HYAKIIEGKTKDEKRNQVKLIDDYGSDHKEN--ETKSNKSDRLKPYKKSPKDENDKCS-D 244
+YA G TK+E +N+ K IDD ++++N E + N D K + P + K S D
Sbjct: 988 YYATYFPGDTKEEDQNEPKEIDDDQEENEDNDAEEEVNVQDE-KATRTPPSTRSRKSSAD 1046
Query: 245 NHKQMAYK 268
K++ ++
Sbjct: 1047 TRKEIKWE 1054
>02_01_0101 + 745924-747343,748077-748174
Length = 505
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 575 SDSSDSDDGTLKNISIFWHSRWWAQPYISMVW 670
SD SDS DG+ ++++ +W + W++P + W
Sbjct: 332 SDDSDSSDGSDEDVAYYWKANIWSRPIPAGSW 363
>03_01_0366 -
2848449-2849032,2849155-2849233,2849346-2849608,
2849742-2849862
Length = 348
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Frame = +2
Query: 128 KLIDDYGSDHKENETKSNKSDRLKPYKKSPKDEN---------DKCSDNHKQMAYKM 271
K + D G + K+ + K K + P +K PK+E D C+D ++ YK+
Sbjct: 97 KAVKDDGGEKKDAQAKEEKGKKQPPEEKKPKEETVLLRIRLHCDGCADRIRRRIYKI 153
>08_02_1325 - 26146775-26147247,26147397-26148579
Length = 551
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 92 EGKTKDEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPK 220
+GKTK+ K N K ++D D NE K+ DR++ +K K
Sbjct: 301 KGKTKELKSNDHKYVEDKDRDRLANERKT--KDRIEEKEKVGK 341
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 92 EGKT-KDEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPKDENDKCSDNHK 253
+GKT KD++R+ K D GSD K + KS++ +L S D+N K N +
Sbjct: 212 DGKTLKDDRRHAKKGKKDKGSDAK-SHGKSSRKIKLGHDSDSDHDDNKKKKKNSR 265
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +2
Query: 83 KIIEGKTKDEKRNQVKLIDDYGSDHKENETK----SNKSDRLKPYKKSPKDENDKCSDNH 250
KI+E K K+E +N+ + + D K TK K D + P K+ E +K +D
Sbjct: 128 KIVEEKKKEEAKNKQEAVTDDKKKEKVIPTKVAIDEKKEDVVVPMKEEFVKEKEKITDAK 187
Query: 251 KQMA 262
+A
Sbjct: 188 NDVA 191
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 107 DEKRNQVKLIDDYGSDHKENETKSNKSDRLKPYKKSPKDEN----DKCSDN 247
DEK + + D+ + E E K +K ++L+ +K ++EN DK +DN
Sbjct: 245 DEKEKEKEKEDENEEEKLEEEEKKDKEEKLEEKEKENEEENGNEKDKENDN 295
>03_01_0046 -
384444-384460,384649-384770,385144-385301,385379-385479,
385748-385823,385983-386093,386165-386356,386729-387024,
388299-388497
Length = 423
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Frame = +2
Query: 80 AKIIEGKTKDEKRNQVKLIDDYGSDHKENETKSNKSD-------RLKPYKKSPKDENDKC 238
A+IIEGKT +E R+ L DD + K K+ D RL K+ E K
Sbjct: 206 ARIIEGKTPEEIRDIFHLPDDLTEEEKLEPLKNINDDPRIRLLNRLYAKKRKELQERQKL 265
Query: 239 SDNHKQMAYK 268
D Q K
Sbjct: 266 KDVQVQEEQK 275
>02_04_0012 -
18891917-18893091,18893209-18893323,18893425-18893477,
18893553-18893813,18896451-18896501,18896629-18896877,
18897046-18897268,18897371-18897487
Length = 747
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/55 (20%), Positives = 28/55 (50%)
Frame = -2
Query: 238 TFIIFILWAFLVWFQTIAFITFSLIFFMIATVVINKLNLISFFIFCFTLDNFSIM 74
T ++ ++W + F ++ F+ F+ + +++K + FCF+L ++M
Sbjct: 457 TVVMLLIWKVRLPFIAAFYVVFTFTEFLYLSSILSKFAEGGYLPFCFSLVLMALM 511
>02_04_0009 -
18865087-18866249,18866357-18866471,18866555-18866607,
18866703-18866963,18867100-18867150,18867255-18867503,
18867634-18867856,18867958-18868071
Length = 742
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/55 (21%), Positives = 27/55 (49%)
Frame = -2
Query: 238 TFIIFILWAFLVWFQTIAFITFSLIFFMIATVVINKLNLISFFIFCFTLDNFSIM 74
T ++ ++W + F + F L F+ + +++K + FCF+L ++M
Sbjct: 456 TVVMLLIWKVRLPFIAAFYAAFGLAEFLYLSSILSKFAEGGYLPFCFSLVLMALM 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,103,765
Number of Sequences: 37544
Number of extensions: 253286
Number of successful extensions: 916
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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